Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30313
         (547 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24439| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   4e-08
SB_48511| Best HMM Match : Ank (HMM E-Value=4.6e-20)                   28   4.3  
SB_12202| Best HMM Match : SRCR (HMM E-Value=4.8e-34)                  28   4.3  
SB_33874| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_40091| Best HMM Match : CNH (HMM E-Value=8.5e-07)                   28   5.7  
SB_36686| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_24439| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 23/62 (37%), Positives = 38/62 (61%)
 Frame = +2

Query: 140 TLXHAFKKGXRWPYFWLGTVLHGIYADNFWHFVLPEXDNFWHSQTPIIFLGARLPLHIIL 319
           +L  + + G  +   W+   LHG+  +   +FV P+ DNFWH+Q+ ++ +  RLPLHI+L
Sbjct: 102 SLFISLRNGKTYILLWITLSLHGLTTECVSYFV-PDVDNFWHAQSMVMLVEKRLPLHIVL 160

Query: 320 LY 325
            Y
Sbjct: 161 FY 162



 Score = 31.9 bits (69), Expect = 0.35
 Identities = 10/45 (22%), Positives = 25/45 (55%)
 Frame = +2

Query: 29  METWLDWXVRKNDXKQLWAAQPTYIISQAVYVLAGLLTLXHAFKK 163
           +  ++ W V   + +++W  +PT+++ + V++L   +T  H   K
Sbjct: 5   VSAFVKWFVIFRNPQEIWREEPTFLMCEIVFLLIAAMTFRHETPK 49


>SB_48511| Best HMM Match : Ank (HMM E-Value=4.6e-20)
          Length = 753

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = -3

Query: 464 SSVRT*XPQCRRECLSVQXPSPPR----KAPRNVEDSALRLHT 348
           S VR   PQ       +  P PPR     +PR VEDSA+ L T
Sbjct: 312 SRVRAPSPQYSTPRSRIPPPIPPRISSSLSPRKVEDSAIALET 354


>SB_12202| Best HMM Match : SRCR (HMM E-Value=4.8e-34)
          Length = 560

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 455 VHWTWHDTDPNIFXXHYWXPWNSYYFHATF 544
           + WT +DT P ++   +    N+ +FH TF
Sbjct: 31  ISWTANDTSPYVYVSDFVVYVNNAFFHKTF 60


>SB_33874| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +2

Query: 152 AFKKGXRW--PYFWLGTVLHGIYADNFWHFVLPEXDNFWHSQTPIIF 286
           ++KKG  +  P F+L T LH ++ +N    ++ + D  + +   ++F
Sbjct: 249 SYKKGAYYSDPIFFLSTALHKVFPENLTKIIMLDSDLRFRNDINLLF 295


>SB_40091| Best HMM Match : CNH (HMM E-Value=8.5e-07)
          Length = 653

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/45 (24%), Positives = 26/45 (57%)
 Frame = -1

Query: 235 EMPEVICVNPMKYGTEPKIRPSSAFFKSMX*C*KASQNVNGLRYY 101
           EM + +C++P+  G + ++R ++ +   +  C    QNV  +++Y
Sbjct: 287 EMEQCLCLSPLGSGFDSRLRLNNPYNSQLYLCVALPQNVLLMQWY 331


>SB_36686| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 675

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 443 PQCRRECLSVQXPSPPR--KAPRNVEDSALRLHTXRGIXMRDTT 318
           PQ RR+ + VQ P+ PR  +AP   + S+L      GI    TT
Sbjct: 174 PQRRRQTVEVQAPAAPREVQAPAAPQVSSLSDEDRHGIVKEVTT 217


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,621,910
Number of Sequences: 59808
Number of extensions: 301493
Number of successful extensions: 844
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)