Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30313
         (547 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37140-2|CAA85502.1|  452|Caenorhabditis elegans Hypothetical pr...   161   2e-40
Z81064-7|CAB02960.2|  382|Caenorhabditis elegans Hypothetical pr...    28   3.8  
AL031621-7|CAE46665.1|  382|Caenorhabditis elegans Hypothetical ...    28   3.8  
AF039046-14|AAB94214.1|  388|Caenorhabditis elegans Prion-like-(...    28   3.8  
Z36948-3|CAA85412.1|  421|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AF043699-3|AAB97566.1| 1220|Caenorhabditis elegans Temporarily a...    27   6.7  
Z70309-7|CAB54292.1|  209|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U41021-4|AAA82334.1|  348|Caenorhabditis elegans Uncoordinated p...    27   8.8  
AF035583-1|AAD09435.1|  348|Caenorhabditis elegans UNC-97 protein.     27   8.8  
AF016451-13|AAB66007.1|  445|Caenorhabditis elegans Activated in...    27   8.8  
AF016451-5|AAB65995.1|  438|Caenorhabditis elegans Activated in ...    27   8.8  
AF016451-4|AAB65996.1|  388|Caenorhabditis elegans Activated in ...    27   8.8  
AF016451-3|AAB66001.1|  388|Caenorhabditis elegans Prion-like-(q...    27   8.8  

>Z37140-2|CAA85502.1|  452|Caenorhabditis elegans Hypothetical
           protein ZK899.2 protein.
          Length = 452

 Score =  161 bits (392), Expect = 2e-40
 Identities = 68/170 (40%), Positives = 104/170 (61%), Gaps = 1/170 (0%)
 Frame = +2

Query: 38  WLDWXVRKNDXKQLWAAQPTYIISQAVYVLAGLLTLXHAFKKGXRWPYFWLGTVLHGIYA 217
           W DW  +      ++    +++  + ++ L   LT  HA++ G R+   W G ++H +  
Sbjct: 35  WFDWICKYQPVSTIYENHTSFLFGEILFFLLAGLTFAHAWRSGTRFVLVWFGILVHALNV 94

Query: 218 DNFWHFVLPEXDNFWHSQTPIIFLGARLPLHIIL-LYPAXIYHAXYAVSKLNLPRYAEPF 394
           +N  +++ P+ DNFW +Q  + F GAR PL+I++ +Y    Y +   +S+L+LP +A   
Sbjct: 95  ENLCYWI-PDMDNFWQAQGILTFFGARAPLYILIGIYHMFDYTSFVLMSRLHLPWWAYGP 153

Query: 395 AVGLXTVLIDIPYDIXAVKFVHWTWHDTDPNIFXXHYWXPWNSYYFHATF 544
           AVGL  V++D+PYDI  +K V WTWHDTDPNIF    W PWNSYYFHA+F
Sbjct: 154 AVGLGAVMLDMPYDIMGIKLVWWTWHDTDPNIFDRMNWVPWNSYYFHASF 203


>Z81064-7|CAB02960.2|  382|Caenorhabditis elegans Hypothetical
           protein F16B12.8 protein.
          Length = 382

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = -3

Query: 437 CR-RECLSVQXPSPPRKAPRNVEDSALRLHT-XRGIXMRD 324
           CR ++C+++    PP+K P+N++ S   L T    + +RD
Sbjct: 83  CRFKKCVNLGMMLPPKKEPKNLDSSITALQTFLAALKLRD 122


>AL031621-7|CAE46665.1|  382|Caenorhabditis elegans Hypothetical
           protein F16B12.8 protein.
          Length = 382

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = -3

Query: 437 CR-RECLSVQXPSPPRKAPRNVEDSALRLHT-XRGIXMRD 324
           CR ++C+++    PP+K P+N++ S   L T    + +RD
Sbjct: 83  CRFKKCVNLGMMLPPKKEPKNLDSSITALQTFLAALKLRD 122


>AF039046-14|AAB94214.1|  388|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 54
           protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 488 C*GQCRARSSVRT*XPQCRRECLSVQXP--SPP 396
           C  QC+A  SV    PQC+++C S   P  +PP
Sbjct: 89  CTQQCQAAPSVAQCQPQCQQQCQSQCAPMYNPP 121


>Z36948-3|CAA85412.1|  421|Caenorhabditis elegans Hypothetical
           protein D2089.5 protein.
          Length = 421

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +1

Query: 355 SLKAESSTLRGAFRGGLGYCTDRHSLRH 438
           SLKA++S +  A  GGL + TD  SL H
Sbjct: 203 SLKADASNMAYASNGGLPFHTDFPSLSH 230


>AF043699-3|AAB97566.1| 1220|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 203 protein.
          Length = 1220

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = +3

Query: 12   TTSSGVWKRGWI-GASEKM 65
            T S  VW RGW+ GAS+K+
Sbjct: 1074 TVSKSVWDRGWLNGASQKV 1092


>Z70309-7|CAB54292.1|  209|Caenorhabditis elegans Hypothetical
           protein R102.8 protein.
          Length = 209

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
 Frame = +2

Query: 233 FVLPEXDNFWHSQTPIIFLGARLPLHIILLYPAXIYHAXYAVSKLNLPRYA-EPFAVGLX 409
           +VLPE +NF++  T  +++   L + I+L+         Y  +    P+   +PF   + 
Sbjct: 23  YVLPESNNFFNPSTYRLYIHVLLTMRILLI---LFITVAYVTAFPGFPKTKWDPFVFDIT 79

Query: 410 TVLIDIPYDIXAVKFVHWTWHDTDPNI 490
               D   D   +  + W   DT P +
Sbjct: 80  VYCNDKTRDTYNL-LIEWWEDDTMPGM 105


>U41021-4|AAA82334.1|  348|Caenorhabditis elegans Uncoordinated
           protein 97 protein.
          Length = 348

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 240 CQXTIISGIRRPLSYSWEPGCPYI*FCC 323
           C   I+  + + ++ SW PGC    FCC
Sbjct: 85  CNEFIVGRVIKAMNASWHPGC----FCC 108


>AF035583-1|AAD09435.1|  348|Caenorhabditis elegans UNC-97 protein.
          Length = 348

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 240 CQXTIISGIRRPLSYSWEPGCPYI*FCC 323
           C   I+  + + ++ SW PGC    FCC
Sbjct: 85  CNEFIVGRVIKAMNASWHPGC----FCC 108


>AF016451-13|AAB66007.1|  445|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 8 protein.
          Length = 445

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 488 C*GQCRARSSVRT*XPQCRRECLSVQXP--SPP 396
           C  QC+A  SV    PQC+++C +   P  +PP
Sbjct: 89  CQQQCQASPSVSQCQPQCQQQCQAQCTPMYNPP 121


>AF016451-5|AAB65995.1|  438|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 7 protein.
          Length = 438

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 488 C*GQCRARSSVRT*XPQCRRECLSVQXP--SPP 396
           C  QC+A  SV    PQC+++C +   P  +PP
Sbjct: 89  CQQQCQASPSVSQCQPQCQQQCQAQCTPMYNPP 121


>AF016451-4|AAB65996.1|  388|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 6 protein.
          Length = 388

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 488 C*GQCRARSSVRT*XPQCRRECLSVQXP--SPP 396
           C  QC+A  SV    PQC+++C +   P  +PP
Sbjct: 89  CQQQCQASPSVSQCQPQCQQQCQAQCTPMYNPP 121


>AF016451-3|AAB66001.1|  388|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 5
           protein.
          Length = 388

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 488 C*GQCRARSSVRT*XPQCRRECLSVQXP--SPP 396
           C  QC+A  SV    PQC+++C +   P  +PP
Sbjct: 89  CQQQCQASPSVSQCQPQCQQQCQAQCTPMYNPP 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,533,776
Number of Sequences: 27780
Number of extensions: 224945
Number of successful extensions: 523
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)