Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30313
         (547 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   1.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   3.5  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   3.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   4.7  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -1

Query: 355 CIRCVVYXCGIQQNYM*GQPGSQEYDRGLRMPEIIVLW 242
           C +C  Y    ++  +    G Q+Y R L +P+I + W
Sbjct: 150 CDKCSTYQSNGEEVCLENCTGYQQYLRLLEVPQINLEW 187


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 301 QPGSQEYDRGLRMPEIIVLWQYEMPEVI 218
           +PGS +  R   + E  ++ Q+E P VI
Sbjct: 670 KPGSADKARNDFLTEASIMGQFEHPNVI 697


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 315 IICRGNRAPRNMIGVCECQ 259
           +IC  N   + +IGV ECQ
Sbjct: 12  LICLLNETAKAIIGVDECQ 30


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 424 HSLRHXGXQVRTLDLARH 477
           H +RH   Q R++DL  H
Sbjct: 82  HPIRHGRRQSRSMDLNAH 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,260
Number of Sequences: 438
Number of extensions: 3089
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)