Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30312
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...   186   3e-48
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    27   3.8  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   5.0  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    26   6.6  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    25   8.7  

>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score =  186 bits (453), Expect = 3e-48
 Identities = 92/182 (50%), Positives = 124/182 (68%), Gaps = 2/182 (1%)
 Frame = +3

Query: 117 PNVTKMNADQKRLILARLTRSTGFENFLAKKWSSEKRFGLEGCEILIPAMKQVIDVSTKL 296
           P   + + DQK +I  RL+ +  FE FL  K+ ++KRFGLEGCE ++P MK +ID S   
Sbjct: 234 PTPFRYSHDQKIMIFDRLSWADSFERFLFTKFPNDKRFGLEGCEAMVPGMKALIDRSVDE 293

Query: 297 GVESIIMGMPHRGRLNVLANVCRKPLHQLFTQFAGL-EAEDDGSGDVKYHLGTYIERLNR 473
           G+ +I++GM HRGRLN+L N+ RKP   +F++F G  + +D+GSGDVKYHLG   +R   
Sbjct: 294 GISNIVIGMAHRGRLNLLHNIVRKPAQAIFSEFRGTQDPDDEGSGDVKYHLGMNYQR-PT 352

Query: 474 VTNKNIRLAVCANPSHLEAVDPVVXGKTRAEQFYRGDNEG-KKVMSILLHGDAAFAGQGV 650
            + K + L++ ANPSHLEA DPVV GK RA Q Y  D    ++ M IL+HGDAAFA QGV
Sbjct: 353 PSGKRVSLSLVANPSHLEAEDPVVLGKVRAIQHYTSDEASHEQSMGILIHGDAAFAAQGV 412

Query: 651 VF 656
           V+
Sbjct: 413 VY 414



 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 20/32 (62%), Positives = 23/32 (71%)
 Frame = +1

Query: 655 FETMHLSDLPAYTTHGTIHXVANNQIGFTTRP 750
           +ET  L  LP Y+T GT+H V NNQIGFTT P
Sbjct: 414 YETFGLHALPGYSTGGTVHIVINNQIGFTTDP 445



 Score = 36.3 bits (80), Expect = 0.005
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +2

Query: 2   LREILNRLEQAYCNNIGIEFMFINSLEQCNWI 97
           LREI+   E+ YC +  +EF  I+S ++ NWI
Sbjct: 196 LREIVETCEKIYCGSFAVEFTHISSRKRSNWI 227


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 227 FRFGRVRNFDSGDEASHRRFHETRSRIHHYGHAP*RAPQR 346
           F +G V   +S D +  RR  E    +HH+G AP   P+R
Sbjct: 836 FGYGTVYKGESFDLSQKRRRGEPV--VHHFGFAPGSTPRR 873


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +1

Query: 340 STYSRTCAVSLCTSCSHSSPVSKLR 414
           S+++  C  ++ T+C++S+P   LR
Sbjct: 608 SSFAEACIQAIATNCNYSTPAELLR 632


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -3

Query: 391 CVNSWCRGLRHTFASTLRRPLWGMPIMMDSTPSFVETSMTCFIAGIKISHP 239
           C +S+ + +   F+    R +W    + DS  S   +S  CFIA I+  +P
Sbjct: 115 CASSYTKLIN--FSEDKPRLVWSQNRISDSFLSSTISSDACFIASIETKNP 163


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 668 CIVSKHDALTSERRVAVQQDRHHLLALVVSPVE 570
           C+V + D LT +      + RH L AL+V  +E
Sbjct: 448 CLVKERDRLTFDTTYKYIKVRHRLKALLVLSIE 480


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,112,485
Number of Sequences: 5004
Number of extensions: 64148
Number of successful extensions: 181
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)