Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30312
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1795 + 29603694-29605208,29605423-29605649,29605739-296060... 215 3e-56
04_03_0741 + 19187333-19188868,19189264-19189490,19189578-191898... 211 4e-55
05_03_0645 + 16529635-16529794,16530188-16530312,16531100-165311... 30 1.7
03_05_0641 - 26341903-26342199,26342292-26342378 29 3.0
03_05_0335 + 23259950-23259952,23260157-23260546,23263504-23263770 29 3.9
02_02_0378 + 9561775-9562947 29 3.9
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 28 6.9
05_03_0577 + 15671570-15672432,15672571-15672785,15672825-156729... 28 6.9
>07_03_1795 +
29603694-29605208,29605423-29605649,29605739-29606071,
29606229-29606475,29606948-29607076,29607161-29607376,
29607454-29607577,29608377-29608612
Length = 1008
Score = 215 bits (525), Expect = 3e-56
Identities = 109/181 (60%), Positives = 134/181 (74%), Gaps = 7/181 (3%)
Frame = +3
Query: 135 NADQKRLILARLTRSTGFENFLAKKWSSEKRFGLEGCEILIPAMKQVIDVSTKLGVESII 314
N D++ ++L RL ST FENFLA KW++ KRFGLEG E LIP MK++ D + LGVE+I+
Sbjct: 219 NKDRRLVMLDRLIWSTQFENFLATKWATAKRFGLEGGETLIPGMKEMFDRAADLGVENIV 278
Query: 315 MGMPHRGRLNVLANVCRKPLHQLFTQFAG----LEAED---DGSGDVKYHLGTYIERLNR 473
+GMPHRGRLNVL NV RKPL Q+F++F G +E ED G+GDVKYHLGT +R R
Sbjct: 279 IGMPHRGRLNVLGNVVRKPLSQIFSEFTGGTRPVEGEDGLYTGTGDVKYHLGTSYDRPTR 338
Query: 474 VTNKNIRLAVCANPSHLEAVDPVVXGKTRAEQFYRGDNEGKKVMSILLHGDAAFAGQGVV 653
K I L++ ANPSHLEAVDPVV GKTRA+QFY D + K M IL+HGD +FAGQGVV
Sbjct: 339 -GGKRIHLSLVANPSHLEAVDPVVIGKTRAKQFYSNDLDRTKNMGILIHGDGSFAGQGVV 397
Query: 654 F 656
+
Sbjct: 398 Y 398
Score = 54.4 bits (125), Expect = 9e-08
Identities = 25/49 (51%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Frame = +2
Query: 2 LREILNRLEQAYCNNIGIEFMFINSLEQCNWIRQRMVAT---ERNKDER 139
LREIL++LEQAYC IG E+M I ++CNW+R ++ E NKD R
Sbjct: 175 LREILSKLEQAYCGPIGYEYMHIPDRDKCNWLRDKIETAKLKEYNKDRR 223
Score = 53.6 bits (123), Expect = 2e-07
Identities = 22/32 (68%), Positives = 26/32 (81%)
Frame = +1
Query: 655 FETMHLSDLPAYTTHGTIHXVANNQIGFTTRP 750
+ET+HLS LP+YTT GTIH V NNQ+ FTT P
Sbjct: 398 YETLHLSALPSYTTGGTIHIVVNNQVAFTTDP 429
>04_03_0741 +
19187333-19188868,19189264-19189490,19189578-19189899,
19190311-19190399,19190882-19191128,19191756-19191884,
19191967-19192182,19192256-19192379,19192857-19193095
Length = 1042
Score = 211 bits (516), Expect = 4e-55
Identities = 105/186 (56%), Positives = 139/186 (74%), Gaps = 7/186 (3%)
Frame = +3
Query: 120 NVTKMNADQKRLILARLTRSTGFENFLAKKWSSEKRFGLEGCEILIPAMKQVIDVSTKLG 299
N + + D+++++L RL ST FE+FLA+KW++ KRFGLEG E LIP MK++ D + LG
Sbjct: 221 NAREYSYDRRQVMLDRLMWSTQFESFLAQKWTTAKRFGLEGAETLIPGMKEMFDRAADLG 280
Query: 300 VESIIMGMPHRGRLNVLANVCRKPLHQLFTQFAG--LEAED-----DGSGDVKYHLGTYI 458
VESI++GMPHRGRLNVL NV RKPL Q+F++F+G AE+ G+GDVKYHLGT
Sbjct: 281 VESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTKPAEEGEGLYTGTGDVKYHLGTSY 340
Query: 459 ERLNRVTNKNIRLAVCANPSHLEAVDPVVXGKTRAEQFYRGDNEGKKVMSILLHGDAAFA 638
+R R K+I L++ ANPSHLEAVDPVV GKTRA+Q+Y D + K + +LLHGD +F+
Sbjct: 341 DRPTR-GGKHIHLSLVANPSHLEAVDPVVAGKTRAKQYYSNDLDRTKNLGVLLHGDGSFS 399
Query: 639 GQGVVF 656
GQGVV+
Sbjct: 400 GQGVVY 405
Score = 52.8 bits (121), Expect = 3e-07
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +2
Query: 2 LREILNRLEQAYCNNIGIEFMFINSLEQCNWIRQRM 109
LR +L RLEQAYC IG E+M I E+CNW+R R+
Sbjct: 182 LRSVLERLEQAYCGTIGYEYMHIPDREKCNWLRDRI 217
Score = 52.4 bits (120), Expect = 4e-07
Identities = 22/32 (68%), Positives = 25/32 (78%)
Frame = +1
Query: 655 FETMHLSDLPAYTTHGTIHXVANNQIGFTTRP 750
+ET+HLS LP YTT GTIH V NNQ+ FTT P
Sbjct: 405 YETLHLSALPNYTTGGTIHIVVNNQVAFTTDP 436
>05_03_0645 +
16529635-16529794,16530188-16530312,16531100-16531173,
16531961-16532006,16532638-16532730,16534429-16535886
Length = 651
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = -3
Query: 730 SGCWRXCVWSRAWCRRAGPTGASSRNTT 647
SG WR C SRA A P +SSR TT
Sbjct: 484 SGSWRACSGSRAVAAVAAPGCSSSRRTT 511
>03_05_0641 - 26341903-26342199,26342292-26342378
Length = 127
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +3
Query: 504 CANPSHLEAVDPVVXGKTRAEQFYRGDNEGKKVMSILLHGDAAFAGQGVVFRD 662
C + H EAV + + ++ +GD+ +K +L HGD A A G D
Sbjct: 51 CRSCGHCEAVQVPITPQQLQKKRGQGDDRRRKKKQLLGHGDRAAAAGGRAMPD 103
>03_05_0335 + 23259950-23259952,23260157-23260546,23263504-23263770
Length = 219
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = -2
Query: 521 VRGVRANSQSNVLVGNAIQTLDVRAQVIFHVAGTIILSFETGELCEQLVQRLTAHVREYV 342
+R A S NV +G I DV F + T+I + LC + + AH+++++
Sbjct: 66 LREFAAPSADNVAIGPQINMGDVD----FDLKSTLITMAQASPLCGKPNENANAHLQQFL 121
Query: 341 EAPSM 327
E SM
Sbjct: 122 EICSM 126
>02_02_0378 + 9561775-9562947
Length = 390
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Frame = +1
Query: 175 DQLGSRISSLRNGPPRSVSVWKGAXXXXXXXXXXXTFPRNSESNPSLWACPIEGASTY-- 348
DQL + + G P S SVW+ +PR+ + + + G S Y
Sbjct: 279 DQLDAAVDGAGGGDPPSPSVWEKMDGATGDHVLFLGYPRSFAVEAARYGGEVPGGSAYFV 338
Query: 349 --SRTCAVSLCT 378
S+ C V C+
Sbjct: 339 GRSKPCRVYRCS 350
>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
Length = 1135
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Frame = -2
Query: 401 TGELCEQLVQRLTAHVREYVEAPSMGHAHN---DGFDS 297
TGELC L + L AH++E PS D +DS
Sbjct: 380 TGELCANLCRNLGAHLKEQDGHPSFSELRKVLLDNYDS 417
>05_03_0577 +
15671570-15672432,15672571-15672785,15672825-15672954,
15672990-15673794,15674505-15674715,15674829-15675436
Length = 943
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 471 RVTNKNIRLAVCANPSHLEAVDPVVXGKTRAEQFYRGDNEGKKV 602
+ + +I VC N H E +TR E Y G+N GKK+
Sbjct: 252 KALDSHITCEVCGNTGHSEND----CSETREEAMYMGNNNGKKL 291
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,653,336
Number of Sequences: 37544
Number of extensions: 474150
Number of successful extensions: 1545
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1541
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -