Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30312
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58698| Best HMM Match : E1_dh (HMM E-Value=4.9e-07) 255 3e-68
SB_36200| Best HMM Match : E1_dh (HMM E-Value=5.1e-40) 163 1e-40
SB_13108| Best HMM Match : PRRSV_2b (HMM E-Value=6.1) 51 1e-06
SB_43369| Best HMM Match : S-antigen (HMM E-Value=2.4) 35 0.081
SB_4854| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.081
SB_29640| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_42467| Best HMM Match : Borrelia_orfA (HMM E-Value=1.7) 30 2.3
SB_6144| Best HMM Match : SCP (HMM E-Value=4.6e-38) 30 2.3
SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_8212| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_58698| Best HMM Match : E1_dh (HMM E-Value=4.9e-07)
Length = 406
Score = 255 bits (624), Expect = 3e-68
Identities = 129/198 (65%), Positives = 150/198 (75%), Gaps = 18/198 (9%)
Frame = +3
Query: 117 PNVTKMNADQKRLILARLTRSTGFENFLAKKWSSEKRFGLEGCEILIPAMKQVIDVSTKL 296
P + D+KR +LARL RSTGFE FLA+KWSSEKRFGLEGC++L+PAMK +ID S++L
Sbjct: 185 PGHDVLTRDEKRTLLARLVRSTGFEGFLARKWSSEKRFGLEGCDVLVPAMKAIIDKSSEL 244
Query: 297 GVESIIMGMPHRGRLNVLANVCRKPLHQLFTQF-AGLEAEDDGSGDVKYHLGTYIERLNR 473
GVES++MGMPHRGRL+VLANVCRKPL Q+FTQF LE D+GSGDVKYHLG +RLNR
Sbjct: 245 GVESVVMGMPHRGRLDVLANVCRKPLEQIFTQFDPTLEPSDEGSGDVKYHLGMSHQRLNR 304
Query: 474 VTNKNIRLAVCANPSHLEAVDPVV-----------------XGKTRAEQFYRGDNEGKKV 602
TNK I+LAV ANPSHLE V GKT+AEQFYRGD GK+V
Sbjct: 305 GTNKIIQLAVVANPSHLEGDKTTVALPNLLKSLFNFREVSQGGKTKAEQFYRGDARGKEV 364
Query: 603 MSILLHGDAAFAGQGVVF 656
MSILLHGDAAF+GQGVV+
Sbjct: 365 MSILLHGDAAFSGQGVVY 382
Score = 49.2 bits (112), Expect = 4e-06
Identities = 17/35 (48%), Positives = 30/35 (85%)
Frame = +2
Query: 2 LREILNRLEQAYCNNIGIEFMFINSLEQCNWIRQR 106
LR+I++RLE+ YC+++G++FMFI +C+WIR++
Sbjct: 147 LRDIVDRLEKTYCHHVGLDFMFIPEKYKCDWIRKK 181
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/25 (76%), Positives = 20/25 (80%)
Frame = +1
Query: 655 FETMHLSDLPAYTTHGTIHXVANNQ 729
+ET HLS LP YTTHGTIH V NNQ
Sbjct: 382 YETFHLSALPHYTTHGTIHIVVNNQ 406
>SB_36200| Best HMM Match : E1_dh (HMM E-Value=5.1e-40)
Length = 382
Score = 163 bits (396), Expect = 1e-40
Identities = 83/181 (45%), Positives = 113/181 (62%), Gaps = 2/181 (1%)
Frame = +3
Query: 120 NVTKMNADQKRLILARLTRSTGFENFLAKKWSSEKRFGLEGCEILIPAMKQVIDVSTKLG 299
N + + D+K+ IL +L + FE FL K+ +KRF LEGCE IPA+ +I+ + + G
Sbjct: 21 NQPQFSTDKKKNILKKLNEAVSFETFLHTKYVGQKRFSLEGCESAIPALDALIEGAAERG 80
Query: 300 VESIIMGMPHRGRLNVLANVCRKPLHQLFTQFAGLEAEDD--GSGDVKYHLGTYIERLNR 473
VE +MGM HRGRLNVLAN+ K +F++F G + +DD GDVKYHLG +R
Sbjct: 81 VEQFVMGMAHRGRLNVLANIFGKNTQNIFSEFDGKDYDDDMYFDGDVKYHLGLTSDR-TT 139
Query: 474 VTNKNIRLAVCANPSHLEAVDPVVXGKTRAEQFYRGDNEGKKVMSILLHGDAAFAGQGVV 653
+ K I L + NPSHLE V V+ G RA+Q N+ KV+ I +HGDAA AGQG+V
Sbjct: 140 TSGKKINLNLAPNPSHLETVGAVIEGIARAKQDRNYPNDFSKVLPIAVHGDAAIAGQGIV 199
Query: 654 F 656
+
Sbjct: 200 Y 200
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +1
Query: 655 FETMHLSDLPAYTTHGTIHXVANNQIGFTT 744
+E + ++ L Y T GTIH V NNQ+GFTT
Sbjct: 200 YEIIQMAKLDGYKTGGTIHLVINNQVGFTT 229
>SB_13108| Best HMM Match : PRRSV_2b (HMM E-Value=6.1)
Length = 311
Score = 50.8 bits (116), Expect = 1e-06
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Frame = +3
Query: 423 SGDVKYHLGTYIERLNRVTNKNIRLAVCANPSHLEAVDPVVXGKTRAEQF------YRGD 584
+GDV HL + ++ L+ + + + NPSHLEA +PVV GK R Q Y D
Sbjct: 152 TGDVLSHLTSSVD-LDYGGQDPLHVTMLPNPSHLEACNPVVAGKARGRQMTLKEGDYSID 210
Query: 585 NE----GKKVMSILLHGDAAFAGQ 644
++ G KV +L+HGDA+FA Q
Sbjct: 211 DKDARIGDKVTCLLVHGDASFADQ 234
>SB_43369| Best HMM Match : S-antigen (HMM E-Value=2.4)
Length = 407
Score = 34.7 bits (76), Expect = 0.081
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +2
Query: 518 ALGGRRPRGAXQDQSRAVLQGRQRGQEGDVDPA 616
AL GR+P+G D S A++ G+ +G+ D+ PA
Sbjct: 256 ALNGRKPKGKLADISPALIGGKPKGKLADISPA 288
Score = 32.3 bits (70), Expect = 0.43
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 518 ALGGRRPRGAXQDQSRAVLQGRQRGQEGDVDPA 616
AL G +P+G D+S A++ G+ +G+ D+ PA
Sbjct: 304 ALIGGKPKGKLADESPALIGGKPKGKLADISPA 336
Score = 31.5 bits (68), Expect = 0.76
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 518 ALGGRRPRGAXQDQSRAVLQGRQRGQEGDVDPA 616
AL G +P+G D S A+ G+ RG+ D+ PA
Sbjct: 192 ALNGGKPKGKLADISPALSGGKPRGKFADISPA 224
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +2
Query: 518 ALGGRRPRGAXQDQSRAVLQGRQRG---QEGDVD 610
AL GR+P+G D S A++ G +G EGD D
Sbjct: 336 ALNGRKPKGKLADISPALIGGEPKGLIKVEGDDD 369
>SB_4854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 243
Score = 34.7 bits (76), Expect = 0.081
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +2
Query: 518 ALGGRRPRGAXQDQSRAVLQGRQRGQEGDVDPA 616
AL GR+P+G D S A++ G+ +G+ D+ PA
Sbjct: 139 ALNGRKPKGKLADISPALIGGKPKGKLADISPA 171
Score = 32.3 bits (70), Expect = 0.43
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 518 ALGGRRPRGAXQDQSRAVLQGRQRGQEGDVDPA 616
AL G +P+G D+S A++ G+ +G+ D+ PA
Sbjct: 107 ALIGGKPKGKFADESPALIGGKPKGKLADISPA 139
Score = 32.3 bits (70), Expect = 0.43
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 518 ALGGRRPRGAXQDQSRAVLQGRQRGQEGDVDPA 616
AL G +P+G D+S A++ G+ +G+ D+ PA
Sbjct: 187 ALIGGKPKGKLADESPALIGGKPKGKLADISPA 219
>SB_29640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 30.7 bits (66), Expect = 1.3
Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
Frame = -2
Query: 479 GNAIQTLDVRAQVIFHVAGTIILSFETGELCEQLVQRLTAHVREYVEAPSMGHAHNDGFD 300
G T+ V V F + L E G C + L H + P H++ D
Sbjct: 83 GAVFDTISVGPSVAFWMRA---LHRENG-YCHHTLDTLVNHTTVTNQFPCCVHSNRSCRD 138
Query: 299 SEFRGNVDDLLHRRNQNFAPFQTET-LLGGPFLS 201
SE VD RR +FAPF TET +L P +S
Sbjct: 139 SENMKAVD--WFRRLIDFAPFPTETWILDSPRIS 170
>SB_42467| Best HMM Match : Borrelia_orfA (HMM E-Value=1.7)
Length = 810
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 313 MMDSTPSFVETSMTCFIAGIKISHPSKPKRFSEDHFLARKFSNP 182
++ STPS V + K S P KPKRF +D + S+P
Sbjct: 133 LLSSTPSDVSNKDAAKVR--KSSRPPKPKRFGDDDGMDTNLSSP 174
>SB_6144| Best HMM Match : SCP (HMM E-Value=4.6e-38)
Length = 468
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 10 NSESFGASVLQQHRY*VHVHKFPGTMQLDPTAHG 111
NS+ F + L +H Y H+H P MQLD G
Sbjct: 311 NSQDFQVNALNRHNYYRHIHNAP-PMQLDKELSG 343
>SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4538
Score = 28.3 bits (60), Expect = 7.0
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = -2
Query: 539 GVDGLQVRGVRANSQSNVLVGNAIQTLDVRAQVIFHVAGTIILSFETGELCEQLVQRLTA 360
G L+ G N N + A+Q L+ ++H+ G + S T + EQ QR T
Sbjct: 316 GYRALKDDGHPKNVNKNPVAEKAVQELEHELLQLYHLGGPV--SKNTTLIGEQHSQRKTY 373
Query: 359 HVR-EYVEAPSMGH 321
H E +AP+ G+
Sbjct: 374 HPHIEKSKAPTTGY 387
>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2848
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +3
Query: 75 PWNNATGSDSAW*PPNVTKMNADQKRLILARLTRSTGFEN-FLAKKWSSEK 224
P+ NAT W P + N D+KR L ++R FEN L+ W K
Sbjct: 42 PFENATFLLRIWVSPTRKRENDDRKRNDLKTISRVEQFENDTLSVLWGRTK 92
>SB_8212| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 160
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 78 WNNATGSDSAW*PPNVTKMNADQKRLILARLTRSTGFENFLAKKWSSEK 224
W+NA G +S P N + L ARL+ + G E+ + +WS+ K
Sbjct: 27 WSNAKGRESLGSPRRSNARNRES--LGSARLSNAKGRESLGSARWSNAK 73
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,389,130
Number of Sequences: 59808
Number of extensions: 536136
Number of successful extensions: 1483
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1479
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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