Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30311
(696 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7616| Best HMM Match : NAD_binding_2 (HMM E-Value=2.00386e-43) 206 1e-53
SB_43094| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0) 33 0.29
SB_12239| Best HMM Match : CPSF_A (HMM E-Value=1.2) 30 1.6
SB_9457| Best HMM Match : PHD (HMM E-Value=3.3e-08) 30 1.6
SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_57023| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11) 29 4.8
SB_48199| Best HMM Match : Lig_chan (HMM E-Value=0) 28 6.3
SB_13083| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_8663| Best HMM Match : DUF250 (HMM E-Value=9.3e-05) 28 6.3
SB_26836| Best HMM Match : BTB (HMM E-Value=1.1e-37) 28 8.3
>SB_7616| Best HMM Match : NAD_binding_2 (HMM E-Value=2.00386e-43)
Length = 270
Score = 206 bits (503), Expect = 1e-53
Identities = 96/201 (47%), Positives = 135/201 (67%)
Frame = -3
Query: 604 GSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQNATLAFMAGGRKEDFERS 425
G+LLID STIDP + K+I +A EKG + DAPVSGG+ A+ TL FM GG++E FE++
Sbjct: 62 GTLLIDCSTIDPALSKEISEMASEKGATYLDAPVSGGITAAKAGTLTFMVGGKEEGFEQA 121
Query: 424 LPLLKVMGAKQFHCGQIGSGQVAKLTNNMLMGITGMATAECMNMGIKMGLEPKVLLDVLN 245
+L MG H G G+GQ AK+ NNML+ ++ + TAE MN+GI++GL+ +++ ++N
Sbjct: 122 KDVLMSMGKNVIHTGPNGTGQAAKICNNMLLAVSMIGTAEAMNLGIRLGLDAEMIAKIIN 181
Query: 244 NSSARSWSTEVYCPVPGLVPTAPSSRNYDGGFKNELMVKDLELASGMALGIRSPIPLGAV 65
+SS R WS+EVY PVPG++ PSS NY GGF LM KDL LA + + P+G++
Sbjct: 182 SSSGRCWSSEVYNPVPGVLEDVPSSNNYQGGFMTALMTKDLGLAQNASSSTMTATPMGSL 241
Query: 64 ATQLYRIVQSRGYGQKDFSFV 2
A Q+YRI+ +GY DF V
Sbjct: 242 AHQIYRIMCIKGYANMDFGSV 262
>SB_43094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 38.3 bits (85), Expect = 0.006
Identities = 22/67 (32%), Positives = 39/67 (58%)
Frame = -3
Query: 694 VDVVVSILTSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFT 515
VDV+++ L + V L G+++ K+GS+ ID +T D N ++ +A KG+
Sbjct: 64 VDVLITALPKPQHVKSA-LEDTGMLSMLKEGSVWIDHTTTDYNETIRLGELATSKGVHAV 122
Query: 514 DAPVSGG 494
+AP++GG
Sbjct: 123 EAPLTGG 129
>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
Length = 870
Score = 32.7 bits (71), Expect = 0.29
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Frame = -3
Query: 610 KKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQNATLAFMAGGRKEDFE 431
+ G ++ID + + E+GL F + VSGG GA+ + M GG ++ +
Sbjct: 139 ESGDIIIDGGNSEYKDSMRRCKALEERGLLFVGSGVSGGEEGARYGP-SLMPGGSEKAWP 197
Query: 430 RSLPLLKVMGAKQFH--C----GQIGSGQVAKLTNN 341
P+ + + AK + C G GSG K+ +N
Sbjct: 198 HIKPIFQAIAAKAGNDPCCDWVGGDGSGHFVKMVHN 233
>SB_12239| Best HMM Match : CPSF_A (HMM E-Value=1.2)
Length = 864
Score = 30.3 bits (65), Expect = 1.6
Identities = 30/94 (31%), Positives = 43/94 (45%)
Frame = -3
Query: 334 MGITGMATAECMNMGIKMGLEPKVLLDVLNNSSARSWSTEVYCPVPGLVPTAPSSRNYDG 155
MG A +E +MG GL + L VL SS RSW + + L P + + Y
Sbjct: 592 MGGKEGAESEGGSMG---GLFLNIGLSVLAMSS-RSWLSYTHQSRVHLTPLSYETLEYAS 647
Query: 154 GFKNELMVKDLELASGMALGIRSPIPLGAVATQL 53
GF +E + + +G L I + LGAV Q+
Sbjct: 648 GFSSEQCPEGIVAIAGNTLRILALEKLGAVFNQV 681
>SB_9457| Best HMM Match : PHD (HMM E-Value=3.3e-08)
Length = 344
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = -3
Query: 589 DSSTIDPNVPKQIFPI-ALEKGLGFTDAPVSGGVMGAQNATLAFMAGGRKEDFERSLPLL 413
++ + P Q F I L + P+SGGV G +AT + + G+K + ++ L
Sbjct: 263 ETKSFAPPTTAQSFAIPGLSNAASTSKQPISGGVGGTSSATSSGASTGQKSSMQSAMKRL 322
Query: 412 KVMGAK 395
+++ K
Sbjct: 323 QMVKKK 328
>SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1716
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +3
Query: 267 FGSSPILMPMFMHSAVAIPVMPINILLVSLATCPEPICPQ--WNCLAPITLRRGRDLSKS 440
F +L+P ++ + IPVMPI +L V + C + + P + L I G L S
Sbjct: 889 FSVGAVLLPSVLNPWLIIPVMPIVVLFVIIG-CMDELLPDVLLDALQLILFSVGAVLLPS 947
Query: 441 SLRP 452
L P
Sbjct: 948 VLNP 951
>SB_57023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 388
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = +2
Query: 542 YREDLFGNIRIYRTRIDQKRSFFRMSHNAIFAQVHVEHDFIAGQYGNDH 688
Y ++ N Y D S + H+ ++ EHD +YG+DH
Sbjct: 250 YEQEHDTNTSRYEQEHDTNTSRYEQEHDTNTSRYEQEHDTNTSRYGHDH 298
>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
Length = 1903
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = +2
Query: 542 YREDLFGNIRIYRTRIDQKRSFFRMSHNAIFAQVHVEHDFIAGQYGNDH 688
Y ++ N Y D S + H+ ++ EHD +YG+DH
Sbjct: 306 YEQEHDTNTSRYEQEHDTNTSRYEQEHDTNTSRYEQEHDTNTSRYGHDH 354
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = +2
Query: 542 YREDLFGNIRIYRTRIDQKRSFFRMSHNAIFAQVHVEHDFIAGQYGNDH 688
Y ++ N Y D S + H+ ++ EHD +YG+DH
Sbjct: 698 YEQEHDTNTSRYEQEHDTNTSRYEQEHDTNTSRYEQEHDTNTSRYGHDH 746
>SB_48199| Best HMM Match : Lig_chan (HMM E-Value=0)
Length = 771
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -1
Query: 501 LEESWVLRTLPW---PSWPEVVKKTSKGPFLSSK*WELSSS 388
LEES+ ++ PSWP TS P+L++K +LS S
Sbjct: 166 LEESYTIQMTKCFTNPSWPVFEDSTSTSPYLTTKVSKLSHS 206
>SB_13083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 180 AVGTSPGTGQYTSVDQERADELFS 251
A+GT TGQYT DQ+ D+ S
Sbjct: 63 AIGTCTRTGQYTRTDQKNLDKACS 86
>SB_8663| Best HMM Match : DUF250 (HMM E-Value=9.3e-05)
Length = 680
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = -3
Query: 520 FTDAPVSGGVMGAQNATLAFMAGGRKEDFERSLPLLKVMGAKQFHCGQIGS-GQVAKLTN 344
F D P + GV+ +N ++F+ +K D + L+ +G+K+ C + ++ K
Sbjct: 70 FNDTPNTFGVLSKENGKISFV-DSQKYDHAINYAGLRDLGSKEIQCNLVRELLRIVKPGG 128
Query: 343 NMLMGITGMATAECMNM 293
++ +G M EC M
Sbjct: 129 SIYLG-HNMEETECKVM 144
>SB_26836| Best HMM Match : BTB (HMM E-Value=1.1e-37)
Length = 521
Score = 27.9 bits (59), Expect = 8.3
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Frame = +3
Query: 165 FLLDGAVGTSPGTGQYTSVDQERADELFSTSNRT-FGSSPILM--PMFMHSAVAIPVMPI 335
F + G S G G+++ E F T +T +GS+P M P H ++ +
Sbjct: 281 FYIIGGYSRSAG-GRWSDTASLANVEKFDTFTQTCYGSTPTSMSYPRSGHCVASVSGLVY 339
Query: 336 NI------LLVSLATCPEPICPQWNCLAPITLRR 419
I L+ + C +P W+ +AP+T R
Sbjct: 340 AIGGENDSLIYDITECYDPTLNSWSVVAPLTAPR 373
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,485,481
Number of Sequences: 59808
Number of extensions: 582826
Number of successful extensions: 1943
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1937
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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