Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30309
         (761 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-...    57   4e-07
UniRef50_Q4W4D1 Cluster: Reverse transcriptase-like; n=1; Anther...    39   0.12 
UniRef50_Q961V7 Cluster: GH03753p; n=5; melanogaster subgroup|Re...    38   0.27 
UniRef50_UPI0000D578AF Cluster: PREDICTED: similar to RNA-direct...    37   0.63 

>UniRef50_Q9XXW0 Cluster: Endonuclease and reverse
           transcriptase-like protein; n=9; cellular organisms|Rep:
           Endonuclease and reverse transcriptase-like protein -
           Bombyx mori (Silk moth)
          Length = 960

 Score = 57.2 bits (132), Expect = 4e-07
 Identities = 24/36 (66%), Positives = 31/36 (86%)
 Frame = +2

Query: 311 LNSLQLIQSRFCRIAVGAPWCVRDVDLHDDLN*PSL 418
           +++LQ +QSRFCR+AVGAPW VR+VDLHDDL   S+
Sbjct: 837 IDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESI 872


>UniRef50_Q4W4D1 Cluster: Reverse transcriptase-like; n=1; Antheraea
           mylitta|Rep: Reverse transcriptase-like - Antheraea
           mylitta (Tasar silkworm)
          Length = 186

 Score = 39.1 bits (87), Expect = 0.12
 Identities = 18/43 (41%), Positives = 25/43 (58%)
 Frame = +2

Query: 314 NSLQLIQSRFCRIAVGAPWCVRDVDLHDDLN*PSLEFLAESTT 442
           + LQ+ Q+R  R   G PW +R VDLH +L  PS+    +S T
Sbjct: 49  HKLQVFQNRVLRKVTGTPWYIRRVDLHRNLEIPSIWTYVKSLT 91


>UniRef50_Q961V7 Cluster: GH03753p; n=5; melanogaster subgroup|Rep:
           GH03753p - Drosophila melanogaster (Fruit fly)
          Length = 888

 Score = 37.9 bits (84), Expect = 0.27
 Identities = 19/58 (32%), Positives = 32/58 (55%)
 Frame = +2

Query: 311 LNSLQLIQSRFCRIAVGAPWCVRDVDLHDDLN*PSLEFLAESTTGSETRPTEKIQRET 484
           ++ +Q  QSR  RI  GAPW +R+ ++H DL    ++ + E     +T+  EK+   T
Sbjct: 809 IDIIQRAQSRILRIITGAPWYLRNENIHRDL---KIKLVIEVIAEKKTKYNEKLTTHT 863


>UniRef50_UPI0000D578AF Cluster: PREDICTED: similar to RNA-directed
            DNA polymerase from mobile element jockey (Reverse
            transcriptase); n=7; Tribolium castaneum|Rep: PREDICTED:
            similar to RNA-directed DNA polymerase from mobile
            element jockey (Reverse transcriptase) - Tribolium
            castaneum
          Length = 1336

 Score = 36.7 bits (81), Expect = 0.63
 Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = +2

Query: 311  LNSLQLIQSRFCRIAVGAPWCVRDVDLHDDLN*PSL-EFLAESTT 442
            ++ LQ  Q++F R A  APW VR+  LH ++  P++ EF  E+ +
Sbjct: 1291 MHKLQTFQNKFLRQAFNAPWFVRNNQLHREVKMPTMEEFFRETAS 1335


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 703,441,596
Number of Sequences: 1657284
Number of extensions: 13529208
Number of successful extensions: 27250
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27243
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 63381147830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)