Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30309
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    26   5.1  
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    25   8.9  
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    25   8.9  

>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 90  YFIYSHKSTSSTPLIVDCNISCTAFACA 7
           + I S ++ SS+ LI D     TAF+CA
Sbjct: 98  HLIGSSRTRSSSSLITDSAAGATAFSCA 125


>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +1

Query: 151 NGTIM--TTELNKFSLLVFGRPCPNKVGPQPLLANQG*LLKE 270
           NG I+  +TEL K  L +   P P+ V P P+L     LLK+
Sbjct: 129 NGAIIGRSTELEKRYLRLTSAPDPDTVRPLPVLKQTLELLKK 170


>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +1

Query: 532 NCSAIQMSKYTFGSSQISVVNCEPFKNDWIKHWS 633
           N SA   S+  +  +      C   K DW K WS
Sbjct: 41  NRSACYASEKDYADALKDATKCTELKPDWAKGWS 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,930,175
Number of Sequences: 5004
Number of extensions: 58747
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)