Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30309
         (761 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0610 + 4889158-4889386,4889584-4890297,4890814-4891166,489...    29   3.1  
07_03_0235 - 15564620-15564748,15565037-15565083,15565305-155653...    28   9.3  

>11_01_0610 +
           4889158-4889386,4889584-4890297,4890814-4891166,
           4891619-4891830,4892633-4892889,4892984-4893162,
           4893901-4893948
          Length = 663

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -3

Query: 687 NLMFPKRSEGGSLVVNNYRPMFDPIVFKWFTIDDRYLRRTERVFRHLY 544
           N + P     GS +V  + PM +     WF   DR+  R +  F + Y
Sbjct: 583 NKLLPSYVPEGSFIVREHTPMSNLFSCLWFNEVDRFTPRDQLSFAYTY 630


>07_03_0235 -
           15564620-15564748,15565037-15565083,15565305-15565374,
           15566228-15566303,15567063-15567132,15567541-15567637,
           15568257-15568319
          Length = 183

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 108 YYLTFTYFIYSHKSTSSTPLIVDCNISCTAFA 13
           +YL+F++  Y +  TS++ L +  NIS   +A
Sbjct: 60  FYLSFSWLYYEYHETSNSFLAISKNISSLLYA 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,510,016
Number of Sequences: 37544
Number of extensions: 360319
Number of successful extensions: 667
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)