Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30307
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.0  
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    26   6.2  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     26   6.2  
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.2  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   6.2  
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    25   8.2  
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch...    25   8.2  

>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -2

Query: 657 LWELG-LETRFWSNGKRPLIESYFERVRQRESFKNTIPNLPQHLKMI 520
           L E+G LET F +N    L  +Y    RQ   F N I N+ Q L+ +
Sbjct: 758 LLEVGFLETGFLANDLENLTSTYRSSNRQLCDFSNRIGNINQKLEKL 804


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 7/20 (35%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +1

Query: 502 WRWSRNY-HFKVLWQIWNSI 558
           W + R+Y +FK++W +W ++
Sbjct: 287 WIYMRHYLNFKIMWAVWGTM 306


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -1

Query: 670 PLATSLGIRIRNTFLE*RKETLD 602
           P A+ L  ++RNTF++  +ET+D
Sbjct: 582 PFASQLAKQLRNTFVKLMQETMD 604


>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = -3

Query: 290 YVIFYISKLIFTLKSKNPKGFKILFMVGSGLTVPLALL 177
           YV++++   +     K P  +K LF++  G+T  + +L
Sbjct: 84  YVMYFLPLEVGLFNPKTPNKWKFLFILNIGVTALITVL 121


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +2

Query: 326 SVNFDNNQSYSIFIAISKANKNHNMNLNSDK 418
           ++ FDNN+ +S+F+ I+      N+ + SD+
Sbjct: 335 TLGFDNNEIHSLFLIIASILHIGNIEVASDR 365


>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 579 RQRESFKNTIPNLPQHL 529
           RQ   F +++P+LPQHL
Sbjct: 115 RQPSVFNSSVPSLPQHL 131


>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 245

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -2

Query: 696 SIADINLAVLLQRLWELGLETRFWSNGKRPLIESYFERVRQRES 565
           +IA ++  V+ +  W + ++TRF    K  L ++     RQ ES
Sbjct: 162 AIACVSDTVIPEAKWRIRVQTRFLKKNKSSLFDNPTIHSRQLES 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,475,012
Number of Sequences: 5004
Number of extensions: 47982
Number of successful extensions: 124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)