Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30307
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70203-1|CAA94104.1|  456|Caenorhabditis elegans Hypothetical pr...    28   5.8  
L15188-3|AAA27948.2|  348|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AF016450-11|AAB65981.1|  317|Caenorhabditis elegans Hypothetical...    28   7.7  

>Z70203-1|CAA94104.1|  456|Caenorhabditis elegans Hypothetical
           protein C05G5.1 protein.
          Length = 456

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +2

Query: 329 VNFDNNQSYSIFIAISKANKNHNMNLNSDKYYEIIFL 439
           +NF N  ++  + AI+    N+  N N+  ++ +IF+
Sbjct: 26  INFSNGNTWITYAAITFYTNNYYSNSNAALFFNVIFM 62


>L15188-3|AAA27948.2|  348|Caenorhabditis elegans Hypothetical
           protein C14B9.3 protein.
          Length = 348

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -3

Query: 593 ILNEYDKENHSKILFQICHSTLK**LRLHLQFMLVLQVLFHL 468
           ++ +Y + + S I F ICHS +     L   F+++    FHL
Sbjct: 255 LMPQYMQYHQSSITFPICHSYMPQLFALMEYFIIIAYATFHL 296


>Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical protein
            ZC84.1 protein.
          Length = 1556

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 158  CCRSWTSAMPGAQSSHCPP 214
            CC+S T A+P + +  CPP
Sbjct: 993  CCKSGTGALPPSVTDGCPP 1011


>AF016450-11|AAB65981.1|  317|Caenorhabditis elegans Hypothetical
           protein B0238.11 protein.
          Length = 317

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -2

Query: 612 RPLIESYFERVRQRESFKNTIPNL 541
           RPLIES+ E + QR+S  +T+ N+
Sbjct: 76  RPLIESFLEFLVQRQSETSTVHNM 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,368,321
Number of Sequences: 27780
Number of extensions: 254411
Number of successful extensions: 597
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)