Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30307
         (721 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    24   1.3  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    24   1.3  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    24   1.3  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    24   1.3  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    24   1.3  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    24   1.3  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    24   1.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   2.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   2.2  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   2.2  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    23   3.8  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   5.1  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   5.1  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   6.7  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   6.7  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   6.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   6.7  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   6.7  

>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 332 NFDNNQSYSIFIAISKANKNHNMNLNSDKYYEII 433
           +  NN  YS +   +  N N+N N    +YY II
Sbjct: 84  SLSNNYKYSNY---NNYNNNYNTNYKKLQYYNII 114


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 332 NFDNNQSYSIFIAISKANKNHNMNLNSDKYYEII 433
           +  NN  YS +   +  N N+N N    +YY II
Sbjct: 84  SLSNNYKYSNY---NNYNNNYNTNYKKLQYYNII 114


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 332 NFDNNQSYSIFIAISKANKNHNMNLNSDKYYEII 433
           +  NN  YS +   +  N N+N N    +YY II
Sbjct: 84  SLSNNYKYSNY---NNYNNNYNTNYKKLQYYNII 114


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 332 NFDNNQSYSIFIAISKANKNHNMNLNSDKYYEII 433
           +  NN  YS +   +  N N+N N    +YY II
Sbjct: 84  SLSNNYKYSNY---NNYNNNYNTNYKKLQYYNII 114


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 332 NFDNNQSYSIFIAISKANKNHNMNLNSDKYYEII 433
           +  NN  YS +   +  N N+N N    +YY II
Sbjct: 84  SLSNNYKYSNY---NNYNNNYNTNYKKLQYYNII 114


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 332 NFDNNQSYSIFIAISKANKNHNMNLNSDKYYEII 433
           +  NN  YS +   +  N N+N N    +YY II
Sbjct: 84  SLSNNYKYSNY---NNYNNNYNTNYKKLQYYNII 114


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 332 NFDNNQSYSIFIAISKANKNHNMNLNSDKYYEII 433
           +  NN  YS +   +  N N+N N    +YY II
Sbjct: 84  SLSNNYKYSNY---NNYNNNYNTNYKKLQYYNII 114


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = +2

Query: 101 INTDSFIAVELAAHLMVNGCCRSWTSAMP 187
           ++ D     EL        CCRSW S  P
Sbjct: 381 MSVDRMQHCELHMQPRKKNCCRSWLSKFP 409


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = +2

Query: 101 INTDSFIAVELAAHLMVNGCCRSWTSAMP 187
           ++ D     EL        CCRSW S  P
Sbjct: 381 MSVDRMQHCELHMQPRKKNCCRSWLSKFP 409


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +2

Query: 332 NFDNNQSYSIFIAISKANKNHNMNLNSDKYYE 427
           +  NN  YS +   +  N N+  N N   YY+
Sbjct: 317 SLSNNYKYSNYNNYNNYNNNNYNNYNKKLYYK 348


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 326 SVNFDNNQSYSIFIAISKANKNHNMNLNSDKYYEII 433
           S N++ N +Y+ +      N N+N N    +YY II
Sbjct: 89  SNNYNYNNNYNNY------NNNYNTNYKKLQYYNII 118


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 380 ANKNHNMNLNSDKYYEIIFLK 442
           +N N+N N N   YY I +++
Sbjct: 94  SNYNNNNNYNKKLYYNINYIE 114


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 380 ANKNHNMNLNSDKYYEIIFLK 442
           +N N+N N N   YY I +++
Sbjct: 332 SNYNNNNNYNKKLYYNINYIE 352


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = -3

Query: 680 IWLSSCNVF 654
           +W+SSC+VF
Sbjct: 278 VWMSSCSVF 286


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 431 LFRNTYHYLDSCYDFY 384
           LF   Y+YL S +DF+
Sbjct: 14  LFLALYYYLTSTFDFW 29


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 536 CGKFGIVFLNDSLCRTRSK 592
           C  FG++F+  S  RTR+K
Sbjct: 16  CVIFGVLFVLFSFLRTRTK 34


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 536 CGKFGIVFLNDSLCRTRSK 592
           C  FG++F+  S  RTR+K
Sbjct: 16  CVIFGVLFVLFSFLRTRTK 34


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 383 NKNHNMNLNSDKYYEII 433
           N  HN N N   YY II
Sbjct: 321 NTIHNNNYNKKLYYNII 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,035
Number of Sequences: 438
Number of extensions: 3641
Number of successful extensions: 25
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)