Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30304
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0128 + 1932721-1935181,1936099-1936256                           29   4.5  
02_05_0030 + 25209067-25209130,25209231-25209400,25210482-252116...    29   4.5  
02_03_0238 + 16730444-16730448,16730484-16730586,16732043-167320...    28   6.0  
03_06_0322 + 33114988-33115130,33116972-33117024,33117432-331177...    28   7.9  

>09_01_0128 + 1932721-1935181,1936099-1936256
          Length = 872

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 408 SLRMSESCVNFLLTKLHYQIHRKDTHLRSA 319
           SL M E CVN    K  +Q H K+ H+R +
Sbjct: 299 SLNMEEMCVNLKHGKEKHQKHLKEIHVRGS 328


>02_05_0030 +
           25209067-25209130,25209231-25209400,25210482-25211668,
           25211695-25212011,25212669-25213374,25214248-25215448
          Length = 1214

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = -2

Query: 506 WVRKWIDIRDK---LGATQCLLKELALEEITKN 417
           W+  W DIRDK   LGA  C+L++  L     N
Sbjct: 498 WISGWQDIRDKYLQLGAKCCILRQKHLRTFDGN 530


>02_03_0238 +
           16730444-16730448,16730484-16730586,16732043-16732099,
           16732198-16732346,16732450-16732545,16732620-16732695,
           16732810-16732883,16732991-16733408
          Length = 325

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 23/67 (34%), Positives = 34/67 (50%)
 Frame = -2

Query: 536 EISVIKKNKLWVRKWIDIRDKLGATQCLLKELALEEITKNTSIV*ECPKVV*IFC*RNYT 357
           +   I K  LW  K I   + L AT+ L KEL++ E+ +NT      P+   IF  RN  
Sbjct: 25  QADTIGKRFLW--KCISEEELLQATKELDKELSMHEMRRNT------PRQEKIFLQRNSN 76

Query: 356 IKFIAKI 336
            + +AK+
Sbjct: 77  AQALAKV 83


>03_06_0322 +
           33114988-33115130,33116972-33117024,33117432-33117780,
           33118450-33118518,33119015-33119150,33120048-33120080
          Length = 260

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = +3

Query: 324 SSNGYLCDEFDSVISLTENS----HNFRTFSNYRSILCDLFQC*FFQKTLSGS 470
           S   +L D +DS  + T       H FR ++  RS+  + F C F  K+ +GS
Sbjct: 122 SKEVFLSDHYDSQSADTIEGKCYVHTFRDYTKLRSVSAEDFFCRFEYKSATGS 174


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,273,332
Number of Sequences: 37544
Number of extensions: 258371
Number of successful extensions: 511
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)