Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30304
         (678 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37754| Best HMM Match : HTH_5 (HMM E-Value=9.4)                     36   0.023
SB_6910| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-06)                  29   3.5  
SB_14232| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_29838| Best HMM Match : EGF (HMM E-Value=1.2e-15)                   28   6.0  
SB_39508| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   8.0  

>SB_37754| Best HMM Match : HTH_5 (HMM E-Value=9.4)
          Length = 450

 Score = 36.3 bits (80), Expect = 0.023
 Identities = 22/67 (32%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
 Frame = -2

Query: 608 TLQRNRMNKLIKLIVMAILEEVDEEISVIKKNKLWVRKWIDIRDKLGATQCLLKE-LALE 432
           T++R RM     LI+M +L++ +  +++  + ++W R+WI  R++LGA   L +E LA  
Sbjct: 7   TMRRRRM----LLILMQLLDDDNPPVTI--ERRVWTREWIKRREELGAFHTLFREYLATG 60

Query: 431 EITKNTS 411
           E  ++ S
Sbjct: 61  ETFQSLS 67


>SB_6910| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-06)
          Length = 349

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +1

Query: 373 QKIHTTFGHSQTIE-VFFVISSNANSF 450
           + IH  FGH QT+E + F  SS A SF
Sbjct: 230 EAIHAMFGHKQTVENISFTFSSIALSF 256


>SB_14232| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/46 (30%), Positives = 30/46 (65%)
 Frame = -2

Query: 608 TLQRNRMNKLIKLIVMAILEEVDEEISVIKKNKLWVRKWIDIRDKL 471
           T++R RM     LI+M +L++ +  +++  + ++W R+WI  R++L
Sbjct: 7   TMRRRRM----LLILMQLLDDDNPPVTI--ERRVWTREWIKRREEL 46


>SB_29838| Best HMM Match : EGF (HMM E-Value=1.2e-15)
          Length = 373

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +3

Query: 3   NTLYSHTKTQFTFRKQSKSRYICNRRSYR*SLVRTR 110
           NT    TK++F+ ++  KSR I NR+S R  L  +R
Sbjct: 21  NTRSYRTKSRFSAKRLGKSRNIKNRKSVRTKLQDSR 56


>SB_39508| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1814

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -2

Query: 563  MAILEEVDEEISVIKKNKLWVRKWIDIRDKL 471
            MA +EE++  +S IKKN+L   KW    DKL
Sbjct: 1459 MADMEELENFLSTIKKNQL---KWCGNSDKL 1486


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,286,400
Number of Sequences: 59808
Number of extensions: 307355
Number of successful extensions: 694
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)