Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30303
(723 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0424 + 17444261-17444665,17445974-17446367,17447367-174474... 33 0.30
06_03_0649 + 23138442-23138842,23139576-23139849,23139929-231405... 33 0.30
09_04_0260 - 16197522-16197669,16198027-16198130,16198508-161987... 30 1.6
08_01_1010 - 10215625-10216335,10216372-10216473 30 1.6
04_04_1536 - 34207425-34207490,34207801-34208268,34208345-342084... 30 1.6
02_05_0694 - 30984408-30985160,30985357-30985487,30985586-30985853 30 1.6
10_08_0936 - 21679002-21679800,21679893-21680116,21681174-216813... 30 2.1
10_06_0146 + 11230357-11230364,11230847-11230893,11231535-112316... 29 2.8
08_01_0510 + 4455805-4456637,4457837-4457912 29 2.8
07_01_0277 - 2038757-2039542 29 2.8
12_02_0077 - 13288916-13289659,13289689-13289691 29 3.7
06_03_1310 + 29238644-29240260 29 3.7
02_05_0661 - 30693701-30693853,30694037-30694196,30694290-306943... 29 3.7
08_02_0781 - 21157715-21157783,21158869-21159087,21161181-211613... 29 4.9
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 29 4.9
06_01_0861 + 6527279-6527582,6527619-6527719,6527817-6528042,652... 28 6.5
12_02_0307 - 17311673-17312032 28 8.6
08_02_0602 + 19183549-19184919 28 8.6
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591... 28 8.6
04_04_0658 + 27006245-27006305,27006447-27006523,27006798-270072... 28 8.6
03_02_0210 - 6425708-6425863,6425955-6426114,6426204-6426295,642... 28 8.6
>09_04_0424 +
17444261-17444665,17445974-17446367,17447367-17447425,
17447507-17447637,17447737-17447833,17447936-17448100
Length = 416
Score = 32.7 bits (71), Expect = 0.30
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 237 PARATMQVKHQRWPKPPELSPIYLPVSPVMPVQP 338
P A M ++HQ P PP+ +P ++P V P P
Sbjct: 45 PGAAAMVMQHQMAPAPPQFAPHFVPFHAVGPPPP 78
>06_03_0649 +
23138442-23138842,23139576-23139849,23139929-23140562,
23140771-23140826,23141178-23141282,23141295-23141535,
23142686-23142690
Length = 571
Score = 32.7 bits (71), Expect = 0.30
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +3
Query: 276 PKPPELSPIYLPVSP-VMPVQPLTSLTL-TQTASGPE 380
P+PP+ SPI++P SP P P +SL T TA P+
Sbjct: 69 PRPPQSSPIFVPDSPNPSPAAPTSSLASGTSTARPPQ 105
>09_04_0260 -
16197522-16197669,16198027-16198130,16198508-16198719,
16198795-16198900,16199006-16199119,16199200-16199417,
16199837-16199900,16199982-16200335,16200609-16200767,
16201486-16202907
Length = 966
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +2
Query: 236 ASQGDYASQASAVAQTAGIIAHLSAGIPG 322
A G AS+ + V +T G+++ +S+G+PG
Sbjct: 99 APAGRAASKGAGVGETLGVVSRVSSGVPG 127
>08_01_1010 - 10215625-10216335,10216372-10216473
Length = 270
Score = 30.3 bits (65), Expect = 1.6
Identities = 24/85 (28%), Positives = 33/85 (38%)
Frame = +3
Query: 174 TSMTPTKASPSSTFKRS*RTWPARATMQVKHQRWPKPPELSPIYLPVSPVMPVQPLTSLT 353
T TP + + S + S T P RA P P SP Y P+SP P + +
Sbjct: 150 TPSTPQRHAASPDYTPSTPTPPRRAASLDYTPSTPPPRAASPDYTPLSP-----PPRAAS 204
Query: 354 LTQTASGPETSPASDNLSVPSSDTW 428
+ S P SP + +S W
Sbjct: 205 PEYSPSTPPPSPVPSDAESGTSPLW 229
Score = 28.3 bits (60), Expect = 6.5
Identities = 26/85 (30%), Positives = 37/85 (43%)
Frame = +3
Query: 171 TTSMTPTKASPSSTFKRS*RTWPARATMQVKHQRWPKPPELSPIYLPVSPVMPVQPLTSL 350
+T TP +A+ S + S T P RA P P SP Y P + P P +
Sbjct: 90 STPTTPRRAA-SPDYTPSTPTPPRRAASPDYTPSTPPPRAASPDYTPST---PTPPRRAA 145
Query: 351 TLTQTASGPETSPASDNLSVPSSDT 425
+ T S P+ AS + + PS+ T
Sbjct: 146 SPNYTPSTPQRHAASPDYT-PSTPT 169
>04_04_1536 -
34207425-34207490,34207801-34208268,34208345-34208485,
34208582-34208820,34209950-34210436
Length = 466
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +2
Query: 41 FLVLLVATSAYAAPSVTINQYSDNEIPRDIDDGKASSVISRAWD 172
FL+LL+ +A AAP ++I Y+ R +++G + A+D
Sbjct: 10 FLLLLIVGAATAAPDMSIISYNAEHGARGLEEGPTEAEARAAYD 53
>02_05_0694 - 30984408-30985160,30985357-30985487,30985586-30985853
Length = 383
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +2
Query: 332 AAANVINSYTDGVRSG--NFAGFRQSLGPFFGHVGQNLNLINQLVTNPGQLRYSVGPALG 505
AA ++ + G+RS AG G + VG + N+++ L NP + V +
Sbjct: 258 AANDLARGFNSGLRSAMARLAGSGALPGMRYS-VGSSYNVVSYLTANPAAAGFKVVNS-A 315
Query: 506 CAGGGRI 526
C GGGR+
Sbjct: 316 CCGGGRL 322
>10_08_0936 -
21679002-21679800,21679893-21680116,21681174-21681361,
21681505-21682597
Length = 767
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = +3
Query: 183 TPTKASPSSTFKRS*RTWPARATMQVKHQRWPKPPELSPIYLPVSPV 323
TPT PSST S P + KHQ+ P PP + + P PV
Sbjct: 83 TPTPPPPSSTASSS---LPPPTPLLPKHQQAPPPPPPTQSHQPPPPV 126
>10_06_0146 +
11230357-11230364,11230847-11230893,11231535-11231642,
11231789-11231828,11231995-11232757
Length = 321
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = -3
Query: 421 SEEGTERLSEAGEVSGPDAVCVRVNDVSGCTGITGDTGR*MGDNSGGLGHR*CLTC 254
S++ +++L +GE++ ND ++ + DNS G HR C C
Sbjct: 213 SQQQSQQLGISGEINSETNASNEDNDEQATQSVSFQQDQSQEDNSNGREHRVCFNC 268
>08_01_0510 + 4455805-4456637,4457837-4457912
Length = 302
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = -3
Query: 496 WSDRVSELTRVSDELID--KIQVLSHVSEEG 410
W D+V ELT D+ ID +++V+SH E G
Sbjct: 69 WRDKVRELTFDIDDCIDSFEVRVISHQQERG 99
>07_01_0277 - 2038757-2039542
Length = 261
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/64 (31%), Positives = 27/64 (42%)
Frame = +2
Query: 155 ISRAWDYVDDTDKSIAILNVQEILKDMASQGDYASQASAVAQTAGIIAHLSAGIPGDACA 334
+ W YVDD K A V+E + S GD TA +A + +PG A A
Sbjct: 12 VDEEWVYVDDFSKEAAA-PVEEA-SPVDSSGDKDDDDGKSGSTAADVAAVDGDLPGGATA 69
Query: 335 AANV 346
+ V
Sbjct: 70 SEAV 73
>12_02_0077 - 13288916-13289659,13289689-13289691
Length = 248
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = -3
Query: 418 EEGTERLSEAGEVSGPDAVCVRVNDVSGCTGITGDTGR*MGDNSGGLGHR*CLTC 254
+E +++L +GE++ ND ++ + DNS G HR C C
Sbjct: 141 QEQSQQLGISGEINSDTNASNEDNDEQATQSVSFQQDQSQEDNSNGREHRVCFNC 195
>06_03_1310 + 29238644-29240260
Length = 538
Score = 29.1 bits (62), Expect = 3.7
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Frame = +3
Query: 177 SMTPTKASPSSTFKRS*RTWPARATMQVKHQRWPK--PPELSPIYLPVSPVMPVQPLTSL 350
S +A+P +T + RT A + H P+ PP P P +P P T
Sbjct: 358 SKAQCQATPPTTRRPGGRTPLAPHRSPLPHHMPPRRTPPTPPPPSSPTPSHLPPPPPTYS 417
Query: 351 TLTQTASGPETSPASDNLSVPSSDT 425
+++ P TSP S + + P S +
Sbjct: 418 ESPKSSMPPSTSPPSSHGASPPSSS 442
>02_05_0661 -
30693701-30693853,30694037-30694196,30694290-30694381,
30694469-30694543,30694671-30694799,30694916-30695003,
30695118-30695224,30695645-30695693,30695802-30695905,
30696108-30696147,30696838-30696911
Length = 356
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 422 HVGQNLNLINQLVTNPGQLRYSVGPALGCAGGGRIY 529
+ G N++ IN V PGQ + VGP++G + G +++
Sbjct: 181 YAGINISGINGEVM-PGQWEFQVGPSVGISAGDQVW 215
>08_02_0781 -
21157715-21157783,21158869-21159087,21161181-21161329,
21161694-21161932,21162045-21162229
Length = 286
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -3
Query: 532 VIDSSTSGTT--QGWSDRVSELTRVSDELIDKIQVLSHVSEEGT 407
+I+ T+ T G S RVSEL + L DK+ V+ S GT
Sbjct: 46 IINDGTAPATIVMGVSGRVSELVEIEPVLRDKVPVIRRFSGGGT 89
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 28.7 bits (61), Expect = 4.9
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
Frame = +2
Query: 428 GQNLNLINQLVTNPGQLRYSVGPALGCAGGGRIYDFEAAWDAILASSDSGFLNEEY--CI 601
G + L N V PG + + +GP G I AA DA SG E
Sbjct: 358 GTDTELGNDSVCQPGSIDFGLGPTENTGSGANI--THAAVDAASPVPLSGQRGREQPEKE 415
Query: 602 VKRLYNSRNSQSNNIAAYITAHLLP 676
V + NS S ++I + + ++LP
Sbjct: 416 VIHIENSMQSGQSDIGSMLPTYILP 440
>06_01_0861 +
6527279-6527582,6527619-6527719,6527817-6528042,
6528132-6528475,6528624-6528989,6529080-6529347,
6529479-6529696
Length = 608
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = +3
Query: 315 SPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSSDTWDKT*ILSINSSLTLVNSDTLSD 494
S +P P T+ T+ ++SG + P L+ P + W K + + ++ + LSD
Sbjct: 516 SDTLP-SPTTNATVDNSSSGSQAPPPMPQLTDPHAILWQKLEAIPMTPDQRVLVGEYLSD 574
Query: 495 Q 497
+
Sbjct: 575 K 575
>12_02_0307 - 17311673-17312032
Length = 119
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +3
Query: 237 PARATMQVKHQRWPKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGP 377
PA A + V RWP+PP +L + + P T + SGP
Sbjct: 66 PAHAQVAVDGARWPRPPRHPARHLTLPLCLRRVPPTQQPPHRPGSGP 112
>08_02_0602 + 19183549-19184919
Length = 456
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 260 QASAVAQTAGIIAHLSAGIPGDACAAANVINS 355
QA+A + + A L AG+ DACA +V +S
Sbjct: 192 QAAAAGASGSVAAALPAGVLDDACADLDVTSS 223
>04_04_1445 - 33658355-33658417,33658536-33658669,33659056-33659116,
33659197-33659356,33660032-33660081,33662237-33662290,
33662630-33662704,33662821-33662949,33663065-33663152,
33663266-33663372,33663513-33663561,33663657-33663760,
33663941-33663980,33664409-33664659,33664674-33664686,
33665846-33666355,33666437-33667657,33667973-33668221,
33668305-33668531
Length = 1194
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 422 HVGQNLNLINQLVTNPGQLRYSVGPALGCAGGGRIY 529
+ G N++ N V PGQ Y VGP++G G I+
Sbjct: 980 YAGINISGTNGEVM-PGQWEYQVGPSVGIEAGDHIW 1014
>04_04_0658 +
27006245-27006305,27006447-27006523,27006798-27007225,
27007614-27007882,27007966-27008249
Length = 372
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +2
Query: 296 AHLSAGIPGDACAAANVINSYTDGVRSGNFAGFRQSLGPFF 418
+ G+PG +C+ A +N+ ++G + AG +++ P F
Sbjct: 168 SRFGVGVPGYSCSNATKVNATSEGEKPELPAGDGEAVAPVF 208
>03_02_0210 -
6425708-6425863,6425955-6426114,6426204-6426295,
6426490-6426564,6426701-6426829,6427312-6427375,
6427761-6427867,6428795-6428843,6428955-6429058,
6429166-6429205,6429492-6429565
Length = 349
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 422 HVGQNLNLINQLVTNPGQLRYSVGPALGCAGGGRIY 529
+ G N++ IN V PGQ + VGP++G A +++
Sbjct: 173 YAGINISGINGEVM-PGQWEFQVGPSVGIAAADQVW 207
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,863,127
Number of Sequences: 37544
Number of extensions: 433351
Number of successful extensions: 1753
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1750
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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