Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30302
         (495 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)...    85   2e-17
At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)...    85   2e-17
At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative     81   3e-16
At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)...    81   3e-16
At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)...    81   3e-16
At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)       80   7e-16
At3g49460.1 68416.m05406 60S acidic ribosomal protein-related co...    38   0.004
At5g05340.1 68418.m00575 peroxidase, putative similar to peroxid...    28   4.0  
At5g45930.1 68418.m05648 magnesium-chelatase subunit chlI, chlor...    27   5.3  
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast...    27   6.9  
At1g29120.2 68414.m03565 expressed protein                             27   9.2  
At1g29120.1 68414.m03564 expressed protein                             27   9.2  

>At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)
           similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
           from [Arabidopsis thaliana]
          Length = 112

 Score = 85.0 bits (201), Expect = 2e-17
 Identities = 44/112 (39%), Positives = 58/112 (51%)
 Frame = +3

Query: 48  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 227
           M +  ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK  E  NV DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60

Query: 228 TNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 383
            N+G+G                                   SD D+GFGLFD
Sbjct: 61  MNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112


>At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)
           similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
           from [Arabidopsis thaliana]
          Length = 112

 Score = 85.0 bits (201), Expect = 2e-17
 Identities = 44/112 (39%), Positives = 58/112 (51%)
 Frame = +3

Query: 48  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 227
           M +  ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK  E  NV DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60

Query: 228 TNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 383
            N+G+G                                   SD D+GFGLFD
Sbjct: 61  MNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112


>At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative
          Length = 111

 Score = 81.4 bits (192), Expect = 3e-16
 Identities = 44/111 (39%), Positives = 56/111 (50%)
 Frame = +3

Query: 51  VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 230
           +S +ELAC Y+ALIL DD + +T E IS ++K A V+VE YWP LFAK  E  N+ DLI 
Sbjct: 1   MSTSELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLIM 60

Query: 231 NIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 383
           N+G+G                                   S+DDM  GLFD
Sbjct: 61  NVGAGGCGVARPVTTAAPTASQSVSIPEEKKNEMEVIKEESEDDMIIGLFD 111


>At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)
           similar to acidic ribosomal protein p1
          Length = 113

 Score = 81.4 bits (192), Expect = 3e-16
 Identities = 44/113 (38%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
 Frame = +3

Query: 48  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 227
           M +  ELAC Y+ +IL D+ +A+T +KI+T++KAA V++E YWP LFAK  E  NV DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60

Query: 228 TNIGS-GVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 383
            N+G+ G                                   SD D+GFGLFD
Sbjct: 61  MNVGAGGGGGGAPVSAAAPAAAGGAAAAAPAKEEKKDEPAEESDGDLGFGLFD 113


>At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)
           similar to acidic ribosomal protein p1
          Length = 113

 Score = 81.4 bits (192), Expect = 3e-16
 Identities = 44/113 (38%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
 Frame = +3

Query: 48  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 227
           M +  ELAC Y+ +IL D+ +A+T +KI+T++KAA V++E YWP LFAK  E  NV DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60

Query: 228 TNIGS-GVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 383
            N+G+ G                                   SD D+GFGLFD
Sbjct: 61  MNVGAGGGGGGAPVSAAAPAAAGGAAAAAPAKEEKKDEPAEESDGDLGFGLFD 113


>At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)
          Length = 113

 Score = 80.2 bits (189), Expect = 7e-16
 Identities = 44/113 (38%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
 Frame = +3

Query: 48  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 227
           M +  ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK  E  NV DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60

Query: 228 TNIGS-GVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 383
            N+G+ G                                   SD D+GFGLFD
Sbjct: 61  MNVGAGGGGGAPVAAAAPAAGGGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113


>At3g49460.1 68416.m05406 60S acidic ribosomal protein-related
           contains weak similarity to Swiss-Prot:52855 60S acidic
           ribosomal protein P1 (L12) [Zea mays]
          Length = 46

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 20/45 (44%), Positives = 30/45 (66%)
 Frame = +3

Query: 51  VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGL 185
           ++  ELAC Y+AL+L D    VT   +ST++K A +++E YWP L
Sbjct: 1   MATGELACTYAALLLHDH---VT---MSTLVKTANLNIESYWPSL 39


>At5g05340.1 68418.m00575 peroxidase, putative similar to peroxidase
           [Nicotiana tabacum] gi|5381253|dbj|BAA82306; similar to
           Peroxidase P7 [Brassica rapa (Turnip)] SWISS-PROT:P00434
          Length = 324

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 199 KALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTR 92
           +  +N P  + S  TAA  KM +I SP+T +S   R
Sbjct: 283 RGYSNNPSSFNSDFTAAMIKMGDI-SPLTGSSGEIR 317


>At5g45930.1 68418.m05648 magnesium-chelatase subunit chlI,
           chloroplast, putative / Mg-protoporphyrin IX chelatase,
           putative similar to SP|P161127 from Arabidopsis
           thaliana, SP|P93162 from Glycine max, SP|O22436 from
           Nicotiana tabacum; non-consensus AA donor splice site at
           exon 1, TG acceptor splice site at exon 2
          Length = 418

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +3

Query: 45  KMVSKAELACVYSALILVDDDVAVTGEKIS---TILKAAAVDVEPYWPGLFAKALEGI 209
           K+    EL+ + + + +VD  +  T +++     I KA    V+ + PGL AKA  GI
Sbjct: 158 KVQKGEELSVIETKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGI 215


>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
           plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
           to plastidic lipoamide dehydrogenase from Arabidopsis
           thaliana [gi:7159282]
          Length = 570

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 15/78 (19%), Positives = 34/78 (43%)
 Frame = +3

Query: 15  GLRQLARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAK 194
           G +++   K  +++  ++     ++  V   + V G+ + T   A  ++  P W  +   
Sbjct: 203 GPQKVKYGKDNIITAKDIIIATGSVPFVPKGIEVDGKTVITSDHALKLESVPEWIAIVGS 262

Query: 195 ALEGINVRDLITNIGSGV 248
              G+   D+ T +GS V
Sbjct: 263 GYIGLEFSDVYTALGSEV 280


>At1g29120.2 68414.m03565 expressed protein
          Length = 455

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 27  LARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEP 170
           LA S   + S+  +A +YSA +    DVAV+    S +L+     +EP
Sbjct: 176 LAHSLGGLFSRHAVAVLYSAAMAQVSDVAVSQSGNSNLLRGRIAGLEP 223


>At1g29120.1 68414.m03564 expressed protein
          Length = 455

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 27  LARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEP 170
           LA S   + S+  +A +YSA +    DVAV+    S +L+     +EP
Sbjct: 176 LAHSLGGLFSRHAVAVLYSAAMAQVSDVAVSQSGNSNLLRGRIAGLEP 223


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,005,504
Number of Sequences: 28952
Number of extensions: 138279
Number of successful extensions: 350
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)