Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30301
         (411 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0)             122   2e-28
SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.85 
SB_13913| Best HMM Match : WH2 (HMM E-Value=8.8e-05)                   29   1.1  
SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.1  
SB_45611| Best HMM Match : p450 (HMM E-Value=0)                        28   2.6  
SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09)          27   4.5  
SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97)                    27   4.5  
SB_14664| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.5  
SB_31885| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)                 27   6.0  
SB_22067| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.)                 27   7.9  

>SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0)
          Length = 100

 Score =  122 bits (293), Expect = 2e-28
 Identities = 62/103 (60%), Positives = 75/103 (72%)
 Frame = +3

Query: 27  IAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKR 206
           +AVGL+KGHK TK             + +P+R KG   K  KFVRD+VREVVG A YEKR
Sbjct: 1   MAVGLQKGHKVTK----------NVTKPKPSRRKGASNKRVKFVRDVVREVVGFAPYEKR 50

Query: 207 AMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 335
            MELL++ KDKRALKF K+RLGTH+R KRKREE+++VLA MRK
Sbjct: 51  VMELLRIGKDKRALKFCKKRLGTHVRGKRKREEITSVLAAMRK 93


>SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1660

 Score = 29.9 bits (64), Expect = 0.85
 Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 12/107 (11%)
 Frame = +3

Query: 33   VGLRKGHKTT-----KISAGRKGITDKAIRIRPARLKGLQ----TKHS---KFVRDLVRE 176
            V  RKGHK T     +   G+KGI  K  R+  +R    Q     KHS   K +R  +RE
Sbjct: 1109 VSTRKGHKRTENYNDRKRDGKKGIDGKRERLSSSRSDDFQQSKMIKHSHLEKSLRQAMRE 1168

Query: 177  VVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNV 317
             + H+       E  KV K K+ ++F K + G  ++   + E+   V
Sbjct: 1169 -LEHSSENSSEEEKRKVRK-KKLVEF-KNKHGLDVKKMDESEKRKKV 1212


>SB_13913| Best HMM Match : WH2 (HMM E-Value=8.8e-05)
          Length = 493

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
 Frame = +3

Query: 6   IMAPRFEIAVGLRKGHKTTKISAGRKGITD---KAIRIRPARLKGLQTKHSKFVRDLVRE 176
           + AP+ E  V   K  K  K+S  ++ +     +AI    A LK  + K +  +R++++ 
Sbjct: 267 LSAPQNEEKVETPKSSKKEKLSELKRRLATPMREAIEAGIA-LKQTKKKLATPLREVIKS 325

Query: 177 VVGHAQYEKR-AMELLKVSKDKRALKFLKRRLGTHIRAK 290
                + +K+ A  L K  + K ALK  K+RL T IRA+
Sbjct: 326 KPKLKETKKKLATPLRKEIQSKPALKETKKRLATPIRAE 364


>SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 126 KGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDK 239
           +GL+    K  + ++ E  GHA Y+K    L KVS+++
Sbjct: 32  RGLRKVSRKHAQRILDETAGHASYKKEHRGLRKVSREQ 69



 Score = 29.5 bits (63), Expect = 1.1
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = +3

Query: 126 KGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREE 305
           +GL+    K  R ++ E  GH  Y+K    L KVS+ K A + L    G H   K++   
Sbjct: 88  RGLRKVSRKHARRILDETAGHNTYKKEHRGLRKVSR-KHAQRILDGTAG-HCSYKKEHRG 145

Query: 306 L 308
           L
Sbjct: 146 L 146



 Score = 28.7 bits (61), Expect = 2.0
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +3

Query: 126 KGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKR 299
           +GL+    +  + ++ E  GH  Y+K    L KVS+ K A + L    G +   K  R
Sbjct: 60  RGLRKVSREQAQRIIDETAGHGSYKKEYRGLRKVSR-KHARRILDETAGHNTYKKEHR 116



 Score = 27.5 bits (58), Expect = 4.5
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +3

Query: 165 LVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNV 317
           ++ E  GH  Y+K    L KVS+ K A + L    G H   K++   L  V
Sbjct: 17  ILNETAGHGSYKKEHRGLRKVSR-KHAQRILDETAG-HASYKKEHRGLRKV 65


>SB_45611| Best HMM Match : p450 (HMM E-Value=0)
          Length = 847

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 16/29 (55%), Positives = 18/29 (62%)
 Frame = +3

Query: 228 SKDKRALKFLKRRLGTHIRAKRKREELSN 314
           +K  RALKFLK RL   +R KR  E L N
Sbjct: 59  NKSPRALKFLKTRL-QDLRKKRDSETLRN 86


>SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09)
          Length = 1248

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 111 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 242
           RP +L+ ++   + +VR L   + G  +Y +    L++ SKD R
Sbjct: 625 RPNKLQVIKLSDANYVRTLENSIQGGIEYLRLGDHLVEFSKDFR 668


>SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97)
          Length = 971

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 270 PIVASRTSEHACLLTP*VTP*PSSHIERVRQLRVLNHGQTW 148
           P     +S  A L+     P PS ++   R+ R  NHG+TW
Sbjct: 772 PTERDYSSALAALMRKAKQPKPSPNLVHTRRERPRNHGRTW 812


>SB_14664| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 12/45 (26%), Positives = 27/45 (60%)
 Frame = +3

Query: 171 REVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREE 305
           RE+    + + +  E++K+ K K++ K +K++     + K+K+EE
Sbjct: 3   REINQKDKKQIKKEEIIKIKKKKKSKKKIKKKKKKKKKKKKKKEE 47


>SB_31885| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)
          Length = 922

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 90  TDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 248
           TDK +++ PA+++ +    S   +  V+ ++G AQY  K   +L  ++K  R L
Sbjct: 659 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKSCPQLSDITKPLRDL 712


>SB_22067| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 705

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = -2

Query: 140 RLKTL*SSWPNS----DGFVCDTLAASGYFSCFVAFSQAYCDFKTRSH 9
           RLK++  SW N+     G  CD   A+G F   V FS  +   K R H
Sbjct: 440 RLKSMRWSWENARTSKGGQSCDDPDATGDFEDEVTFSDPHLQKKFRRH 487


>SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1246

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 90  TDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 248
           TDK +++ PA+++ +    S   +  V+ ++G AQY  K   +L  ++K  R L
Sbjct: 618 TDKGLKVNPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 671


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,198,900
Number of Sequences: 59808
Number of extensions: 206961
Number of successful extensions: 593
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)