Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30300
(727 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 79 6e-16
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 44 2e-05
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 39 6e-04
SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces... 26 4.8
SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr ... 26 6.3
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 8.3
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 25 8.3
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 79.0 bits (186), Expect = 6e-16
Identities = 53/179 (29%), Positives = 91/179 (50%), Gaps = 7/179 (3%)
Frame = +1
Query: 190 PSTVTSGVPFEEIFTLGVALPIFGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQA-HGLK 366
PS+ TS P ++ IFG+PL ++V S +D+GLP+VV I+YL++ K
Sbjct: 1043 PSSTTSAEPLQKHIVRKSG--IFGLPLNEAVNISTQFNDSGLPIVVYRCIEYLESCRAEK 1100
Query: 367 SKDIYRTEPDKIKFQQLRKLFTDRGPTFPY-----HWDVPVACAMLKAFISELPESILTQ 531
+ IYR + L++ F + G + +DV V +LK ++ LP ++L
Sbjct: 1101 EEGIYRLSGSASTIKHLKEQFNE-GVDYDLLSSDEEFDVHVIAGLLKLYLRNLPTNLLDT 1159
Query: 532 ELHGQFEQATAIAEPQRE-ATMTNLINKLPNCNHNLLAWLMRHFQHVVSNEQVNQANIK 705
+H FE + + ++I+KLP N LL L+ H + +++ E+VN+ NI+
Sbjct: 1160 SMHKLFELLPNVPNDSAALGELCDVISKLPPENFALLDSLLHHLRRIIAFEKVNKMNIR 1218
>SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1150
Score = 44.0 bits (99), Expect = 2e-05
Identities = 33/154 (21%), Positives = 70/154 (45%), Gaps = 9/154 (5%)
Frame = +1
Query: 256 FGVPLQQSVERSRCHDDTG-------LPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQ 414
FGVPL+ VER+ G +P + +++ ++ + ++R + + ++
Sbjct: 835 FGVPLEILVERNNAQSTVGTGVGVKHIPAFIGNTLAAMKRKDMSVVGVFRKNGNIRRLKE 894
Query: 415 LRKLFTDRGPTFPYHWDVPV-ACAMLKAFISELPESILTQELHGQFEQATAI-AEPQREA 588
L + + Y + P+ A+LK F+ ELP+ +LT +L G F ++ + +E +R
Sbjct: 895 LSDMLDVSPDSIDYEQETPIQLAALLKKFLRELPDPLLTFKLFGLFITSSKLESEEERMR 954
Query: 589 TMTNLINKLPNCNHNLLAWLMRHFQHVVSNEQVN 690
+ I LP + + + + V S ++
Sbjct: 955 VLHLTICLLPKGHRDTMEVIFGFLYWVASFSHID 988
>SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 39.1 bits (87), Expect = 6e-04
Identities = 31/146 (21%), Positives = 65/146 (44%), Gaps = 2/146 (1%)
Frame = +1
Query: 274 QSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLFTDRGPTFP 453
+S+E + + LP V+ + + AHGL+ + IYR + + L F +
Sbjct: 780 RSLENQLKIEGSVLPQVIAMCVSCVDAHGLEVEGIYRISGSASQVRVLVDEFENGSIRME 839
Query: 454 YHWDVPVAC-AMLKAFISELPESILTQELHGQFEQATAI-AEPQREATMTNLINKLPNCN 627
+ AC ++LK ++ LPE ++ + + +A I E ++ + ++ L +
Sbjct: 840 HLTSDLFACTSVLKTYLHRLPEPVIPGTQYEELLEAEKIEKEEEKIERVVEVMKTLHPAH 899
Query: 628 HNLLAWLMRHFQHVVSNEQVNQANIK 705
++ +L+ H V + + N N K
Sbjct: 900 LSVFRFLIAHLGRVCKHAEKNLMNSK 925
>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 366
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +1
Query: 595 TNLINKLPNCNHNLLAWLMRHFQHVVSNEQVNQANIK 705
T++ +KLPNC+ +L+R + V+S++ + NIK
Sbjct: 221 TSVCSKLPNCD----TFLLRPLREVLSSDLKSYMNIK 253
>SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 238
Score = 25.8 bits (54), Expect = 6.3
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Frame = +1
Query: 301 DDTGLPLVVR-DSIDYLQAHGLKSKDI--YRTEPDKIKFQQL 417
+DT LP + +DY +A + +K+I +R DK+KFQQL
Sbjct: 86 EDTLLPSPCQLVGVDYSEAAIVLAKNIARHRQFSDKVKFQQL 127
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.4 bits (53), Expect = 8.3
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +3
Query: 489 QSFYQ*TPGIDTNTRAAR---SVRTSHRYSRTSAGSDDDEP 602
+SF T G+ T + A S TSH R+SAG+D P
Sbjct: 149 ESFEAFTQGMQTTPQRAGAGVSTATSHTRRRSSAGTDPFSP 189
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 25.4 bits (53), Expect = 8.3
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Frame = +1
Query: 361 LKSKDIYRTEPDKIKFQQLRK---LFTDRGPTFPYHWDVPVACAM---LKAFISELPESI 522
L +D+YRT PD + F+ K +D DVP+ + L F + LPE+
Sbjct: 344 LIERDLYRTFPDNVHFRHKSKHSRNSSDASEHSSEEPDVPMISKLRRVLMTFATYLPENG 403
Query: 523 LTQELH 540
Q L+
Sbjct: 404 YCQSLN 409
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,457,147
Number of Sequences: 5004
Number of extensions: 48854
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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