Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30300
(727 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0413 + 17854787-17854847,17855362-17855606,17856127-178561... 67 1e-11
12_01_0356 - 2707820-2708395,2708475-2708705,2709071-2709190,270... 38 0.011
11_01_0332 + 2483743-2484131,2486062-2486182,2486307-2486426,248... 34 0.100
01_06_0230 + 27718840-27720188,27720983-27721174,27721488-277215... 30 1.6
04_03_0664 + 18501248-18502802,18503370-18505054 29 2.8
11_01_0477 - 3688357-3690042 29 3.8
08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034 28 6.6
07_01_0707 - 5335643-5336905 28 6.6
01_07_0067 - 40857544-40858164,40858265-40858370,40858541-408586... 28 6.6
02_03_0091 + 15112390-15112396,15113469-15113962 28 8.7
>07_03_0413 +
17854787-17854847,17855362-17855606,17856127-17856189,
17856276-17856294,17856547-17856645,17856725-17856802,
17856891-17857135,17857796-17857952,17858161-17858303
Length = 369
Score = 67.3 bits (157), Expect = 1e-11
Identities = 44/154 (28%), Positives = 78/154 (50%), Gaps = 2/154 (1%)
Frame = +1
Query: 238 GVA-LPIFGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQ 414
GVA +FGVP++ +V+R + +PLV+ DYL GL ++ ++++E +K QQ
Sbjct: 124 GVASTDVFGVPIEATVQREQ--SGKAVPLVLVRCADYLVISGLSNEYLFKSEGEKKVLQQ 181
Query: 415 LRKLFT-DRGPTFPYHWDVPVACAMLKAFISELPESILTQELHGQFEQATAIAEPQREAT 591
L L+ D G FP + A++K +++ +PE + T L+ + A A
Sbjct: 182 LVSLYNEDSGAPFPDGVNPIDVAALIKCYLASIPEPLTTFSLYDELRDARVSI-----AD 236
Query: 592 MTNLINKLPNCNHNLLAWLMRHFQHVVSNEQVNQ 693
+ N++ KLPN N+ L ++ V +N+
Sbjct: 237 LRNILKKLPNVNYMTLEFVTALLLRVSRKSSLNK 270
>12_01_0356 -
2707820-2708395,2708475-2708705,2709071-2709190,
2709281-2709401,2711588-2712027
Length = 495
Score = 37.5 bits (83), Expect = 0.011
Identities = 30/116 (25%), Positives = 47/116 (40%)
Frame = +1
Query: 358 GLKSKDIYRTEPDKIKFQQLRKLFTDRGPTFPYHWDVPVACAMLKAFISELPESILTQEL 537
GL+++ I+R + + + +R G P DV ++KA+ ELP +L
Sbjct: 185 GLRAEGIFRINAENSQEELVRDQLN--GGIVPEGIDVHCLAGLIKAWFRELPSGVLDSIP 242
Query: 538 HGQFEQATAIAEPQREATMTNLINKLPNCNHNLLAWLMRHFQHVVSNEQVNQANIK 705
Q Q Q E + LP LL W + VV EQ+N+ N +
Sbjct: 243 PEQVMQC------QSEEDCARVAKCLPPTEAALLDWAVNLMADVVQEEQINKMNAR 292
>11_01_0332 +
2483743-2484131,2486062-2486182,2486307-2486426,
2486897-2487127,2487205-2487783
Length = 479
Score = 34.3 bits (75), Expect = 0.100
Identities = 28/116 (24%), Positives = 46/116 (39%)
Frame = +1
Query: 358 GLKSKDIYRTEPDKIKFQQLRKLFTDRGPTFPYHWDVPVACAMLKAFISELPESILTQEL 537
GL+++ I+R + + + +R P D+ ++KA+ ELP +L
Sbjct: 168 GLRAEGIFRINAENSQEEFVRDQLNSG--IVPDGIDIHCLSGLIKAWFRELPSGVLDSIP 225
Query: 538 HGQFEQATAIAEPQREATMTNLINKLPNCNHNLLAWLMRHFQHVVSNEQVNQANIK 705
Q Q Q E + LP LL W + VV EQ+N+ N +
Sbjct: 226 PEQVMQC------QSEEDCARVAKCLPPAEAALLEWAVNLMADVVQEEQINKMNAR 275
>01_06_0230 + 27718840-27720188,27720983-27721174,27721488-27721569,
27721651-27721839,27721964-27722077,27722470-27722560,
27722632-27722789,27723401-27723826,27724355-27724727,
27725075-27725238
Length = 1045
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -2
Query: 366 F*SVCL*VIDAVSDDQRQTGVVMATRALHRLLQWYT-EYRERNSQCENFFKRNT-RCHR 196
F SV V A SD Q + R WYT E+ E++ +CENF+ T RC R
Sbjct: 973 FLSVSTSVEKASSDQQMLPCSLWLFRQNFDTFSWYTKEHMEKSYRCENFWVNYTHRCPR 1031
>04_03_0664 + 18501248-18502802,18503370-18505054
Length = 1079
Score = 29.5 bits (63), Expect = 2.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 222 RNFHIGSCAPYIRCTTATVCGALSL 296
+ H+GSC Y C ++CG SL
Sbjct: 827 KKLHVGSCGTYETCLVNSLCGLTSL 851
>11_01_0477 - 3688357-3690042
Length = 561
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 367 ILIRVPVSNRCCLGRPAADRCRHGN 293
+L V VS RCC GR A +C H +
Sbjct: 295 VLKLVDVSPRCCCGRRGATQCDHSS 319
>08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034
Length = 930
Score = 28.3 bits (60), Expect = 6.6
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 12/115 (10%)
Frame = +1
Query: 313 LPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLFTDRGPTFP---YHWD------ 465
LP+ + D++ YL+ L+ I + ++ Q +++L +R FP H
Sbjct: 611 LPMQI-DNLRYLETLDLRGCAIEKLPASTVRLQNMQRLLVNRSVKFPDEIGHMQALQTLL 669
Query: 466 -VPVACAMLKAFISELPESILTQELHGQFEQATAIAEPQREAT--MTNLINKLPN 621
V ++C +K F+ EL + I + L+ F + + + R+ T + + +N+L N
Sbjct: 670 FVSMSCNSIK-FVEELSKLIKMRVLNITFSKPVDMVDEVRKYTDSLVSSLNELFN 723
>07_01_0707 - 5335643-5336905
Length = 420
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +3
Query: 573 TSAGSDDDEPHQ*AAEL*PQSAGLADETFP--TRCLQRAGESSEHQTIMAA 719
T AG+DD PH A E P + +E F T RA + E++ + A
Sbjct: 142 TGAGADDPLPHDLAEENKPWAGWRLEERFHAFTHAFGRASSTGEYKVLRVA 192
>01_07_0067 -
40857544-40858164,40858265-40858370,40858541-40858659,
40859195-40859392,40859659-40859724,40859798-40859916,
40860295-40860580
Length = 504
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -3
Query: 329 RTTSGRPVSSWQRERSTDCCSGTPNIGSATPNVKISS 219
R + R S WQRE+STD S +P K SS
Sbjct: 50 RQWTERVRSLWQREKSTDQISSSPGTSQVAAAAKPSS 86
>02_03_0091 + 15112390-15112396,15113469-15113962
Length = 166
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 265 PLQQSVERSRCHDDTGLPLVVRDSI 339
PL + + HDDTG PL++ D +
Sbjct: 132 PLPSDLSYAFLHDDTGSPLIISDKL 156
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,174,849
Number of Sequences: 37544
Number of extensions: 327088
Number of successful extensions: 1022
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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