Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30300
         (727 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4894| Best HMM Match : No HMM Matches (HMM E-Value=.)               96   3e-20
SB_718| Best HMM Match : RhoGAP (HMM E-Value=0)                        63   2e-10
SB_38980| Best HMM Match : RhoGAP (HMM E-Value=0)                      63   3e-10
SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0)                      59   4e-09
SB_42550| Best HMM Match : RhoGAP (HMM E-Value=0)                      56   3e-08
SB_42552| Best HMM Match : RhoGAP (HMM E-Value=0)                      54   9e-08
SB_16463| Best HMM Match : RhoGAP (HMM E-Value=5.7e-25)                54   1e-07
SB_19750| Best HMM Match : RhoGAP (HMM E-Value=8.4e-34)                53   3e-07
SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   4e-05
SB_31303| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.003
SB_40773| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.019
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             29   3.8  
SB_50370| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_7922| Best HMM Match : SMC_C (HMM E-Value=1.5e-08)                  28   8.9  

>SB_4894| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 486

 Score = 95.9 bits (228), Expect = 3e-20
 Identities = 49/153 (32%), Positives = 85/153 (55%), Gaps = 1/153 (0%)
 Frame = +1

Query: 250 PIFGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLF 429
           PIFG+PL+++V++S   D   LP + R+ I Y++ +GL  + IYR    K K   L++L+
Sbjct: 97  PIFGIPLEKAVKQSILPDGVELPRLFREGIMYVEENGLNVEGIYRVSGVKSKVDALKELY 156

Query: 430 TDRGPTFPYHWDVPVACAMLKAFISELPESILTQELHGQFEQATAIAEPQREATMT-NLI 606
                     ++  V  +++K ++ ELPES+LT  L  +F +   I + + +   T  L+
Sbjct: 157 DQGKQVDLKEYEPEVVASIVKQYLRELPESVLTMMLAPRFNELIGIQDKKEQLEKTKQLL 216

Query: 607 NKLPNCNHNLLAWLMRHFQHVVSNEQVNQANIK 705
            +LP+ N  LLAW M H  HV+     N+ +++
Sbjct: 217 AELPSPNRTLLAWTMVHMGHVIDKASENKMSLQ 249


>SB_718| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 598

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 37/154 (24%), Positives = 72/154 (46%), Gaps = 4/154 (2%)
 Frame = +1

Query: 253 IFGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLFT 432
           +FGV ++    R  C     +PL+V   +  ++  GL+   IYR        ++L++ F 
Sbjct: 328 VFGVDIETVTSRESCD----IPLIVIGCVREIEKRGLEEVGIYRLSGASSDVKRLKEGFD 383

Query: 433 DRGPT---FPYHWDVPVACAMLKAFISELPESILTQELHGQFEQATAIAE-PQREATMTN 600
           +   +        D+     + K ++ +LPE + T EL+ +F +A A+A+  ++  TM  
Sbjct: 384 ENSQSALVLVSEADIHAVAGLFKMYLRDLPEPLFTDELYDKFVKAYAMADAEEKRETMLE 443

Query: 601 LINKLPNCNHNLLAWLMRHFQHVVSNEQVNQANI 702
           L   LP  N     +L +H + V    +V++  +
Sbjct: 444 LFRSLPTPNRLTACYLFQHLRKVAEKSEVHKMGL 477


>SB_38980| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 367

 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 3/149 (2%)
 Frame = +1

Query: 256 FGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLFTD 435
           FGVPL++ V +SR  D + +P V+   + YL   GLK + I+R   +    + L+  F  
Sbjct: 176 FGVPLEE-VTKSR--DGSPIPWVLAKIVHYLSQCGLKHEGIFRVSGNHKVVESLKATFDR 232

Query: 436 RGPTFPYHWDVPVACAMLKAFISELPESILTQELHGQFEQATAI---AEPQREATMTNLI 606
            G       DV     +LK F+ ELPE  + Q L   F +   +     P     +  L+
Sbjct: 233 DGDADLEECDVMAVAGLLKLFLRELPEPPVPQALTTDFIKVHEVYGDDNPDCLDELRALL 292

Query: 607 NKLPNCNHNLLAWLMRHFQHVVSNEQVNQ 693
           +KLP  N+ LL +L      V  NE+ N+
Sbjct: 293 DKLPYLNYELLKFLCHFLVEVSMNEENNK 321


>SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 1277

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 34/144 (23%), Positives = 75/144 (52%), Gaps = 9/144 (6%)
 Frame = +1

Query: 301  DDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLFTDRGPTFPYHW----DV 468
            + + +PL+VR  +  ++  GL+S  +YR   +  + ++LR  F +             D+
Sbjct: 940  EQSSVPLLVRKCVLEIEKRGLESVGLYRISGNARRKKELRGFFDENSEAVDISEENCPDI 999

Query: 469  PVACAMLKAFISELPESILTQELHGQFEQATA--IAEP---QREATMTNLINKLPNCNHN 633
             V   +LK ++ ELPE ++T+++     +A    I +    +R   M+ L++ LP+ N +
Sbjct: 1000 NVITGILKDYLRELPEPLITEKMTEGLRKAAKNEIQDKKVDERRQVMSELLSGLPDPNRH 1059

Query: 634  LLAWLMRHFQHVVSNEQVNQANIK 705
             L +++ H +HV+  ++ N+ + +
Sbjct: 1060 TLVFILNHLRHVMEKKEFNKMDAR 1083


>SB_42550| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 790

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 46/153 (30%), Positives = 67/153 (43%), Gaps = 2/153 (1%)
 Frame = +1

Query: 253 IFGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLFT 432
           +FGVP+   ++RS       LP  +  +I+YLQ   ++S  I+R    K +   L+ +  
Sbjct: 300 VFGVPMSVVLQRS----GQPLPRPILCAINYLQRTCVESVGIFRKSGGKQRINNLKDMME 355

Query: 433 DRGPTFPYHWDVPVACA-MLKAFISELPESILTQELHGQFEQA-TAIAEPQREATMTNLI 606
           D      +    P   A MLK +  +LP+ ILT +L   F    T I    R   M   I
Sbjct: 356 DNPEHTDFEGMSPYDLADMLKQYFRDLPDPILTSKLAETFITIHTYIPAELRVEAMQAAI 415

Query: 607 NKLPNCNHNLLAWLMRHFQHVVSNEQVNQANIK 705
             +P+ N   L  L+     V  N  VNQ N K
Sbjct: 416 LLMPDENREALQTLLLFLNEVAENSAVNQMNEK 448


>SB_42552| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 945

 Score = 54.4 bits (125), Expect = 9e-08
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
 Frame = +1

Query: 313 LPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLFTDRGPTFPYHWDVP-VACAML 489
           +P +V  +I++L+ +GL    I+RT   K + +Q+R+ F     T     D P    A+ 
Sbjct: 406 VPTIVNQAIEHLENYGLHVLGIFRTGGSKKRMKQMREQFDSGEKTQFNAEDNPHDVAALF 465

Query: 490 KAFISELPESILTQELHGQFEQATAIAEPQREATMTNLI-NKLPNCNHNLLAWLMRHFQH 666
           K ++ +LPE +LT+EL+  F +   I++  +E     L+   LP  N + L  L+     
Sbjct: 466 KEYLRDLPEPLLTRELYSAFLETQGISDTAKEIEALQLLCCLLPAANRDTLNALLAFLSK 525

Query: 667 V 669
           V
Sbjct: 526 V 526


>SB_16463| Best HMM Match : RhoGAP (HMM E-Value=5.7e-25)
          Length = 252

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
 Frame = +1

Query: 463 DVPVACAMLKAFISELPESILTQELHGQFEQATAIAEP-QREATMTNLINKLPNCNHNLL 639
           DV    ++LK F+ +LPE ++T EL+  F +A    +P +R   +  LIN+LP+ N+  L
Sbjct: 38  DVNNITSLLKQFLRKLPEGLVTAELYESFIEANRKDDPVERMGALKMLINELPDHNYETL 97

Query: 640 AWLMRHFQHVVSNEQVNQ 693
             L+ H +HV  +   N+
Sbjct: 98  RHLLTHLKHVAEHADTNK 115


>SB_19750| Best HMM Match : RhoGAP (HMM E-Value=8.4e-34)
          Length = 128

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 4/121 (3%)
 Frame = +1

Query: 313 LPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLFTDRGPT---FPYHWDVPVACA 483
           +PL+V   +  ++  GL+   IYR        ++L++ F +   +        D+     
Sbjct: 7   IPLIVIGCVREIEKRGLEEVGIYRLSGASSDVKRLKEGFDENSQSALVLVSEADIHAVAG 66

Query: 484 MLKAFISELPESILTQELHGQFEQATAIAE-PQREATMTNLINKLPNCNHNLLAWLMRHF 660
           + K ++ +LPE + T EL+ +F +A A+A+  ++  TM  L   LP  N     +L +H 
Sbjct: 67  LFKMYLRDLPEPLFTDELYDKFVKAYAMADAEEKRETMLELFQSLPTPNRLTACYLFQHL 126

Query: 661 Q 663
           +
Sbjct: 127 R 127


>SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1137

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 39/154 (25%), Positives = 60/154 (38%), Gaps = 5/154 (3%)
 Frame = +1

Query: 229 FTLGVALPIFGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKF 408
           F L    P+FG  L      S        P+ V   I+ ++  G+    IY         
Sbjct: 205 FQLAAQAPVFGQELATQFRPS----SKPAPVCVMKCIEAIEQRGMNVDSIYLISSQGSNK 260

Query: 409 QQLRKLFTDRGPTFPYH---WDVPVACA-MLKAFISELPESILTQELHGQFEQATAIAEP 576
             LR  F             W+ P   A +LK +  ELP S+ T+E +  F Q     E 
Sbjct: 261 YSLRLAFCQDPANVNMRDEEWNDPHCIATVLKMYFQELPTSLFTEEKYSTFIQIFKTNEN 320

Query: 577 QREATMTNLINKLPNCNHNLLAWLMRH-FQHVVS 675
                +   IN LP  + +++ +LM+H F+  V+
Sbjct: 321 DSFGNLLKEINSLPKEHKSVIEYLMKHLFKEAVN 354


>SB_31303| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 374

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
 Frame = +1

Query: 253 IFGVPLQQSVERSRCHDDTGLPLVVRDSIDYLQAHGLKSKDIYRTEPDKIKFQQLRKLFT 432
           +FG  L ++V+         +P+VV   I+Y++ +GL+ + ++R  P   K     K   
Sbjct: 97  MFGGDLCETVKFEARKGGGFVPIVVDVCIEYIKKYGLEEEGLFRL-PGNAKHISTLKAQF 155

Query: 433 DRG--PTFPYHWDVPVACAMLKAFISELPESILTQELHGQFEQATAIAEPQREAT 591
           +RG  P      D+    ++LK ++ EL E ++  +    F  A    +   E+T
Sbjct: 156 NRGESPELSDEKDIHTVASLLKLYLRELSEPVIPYDFFEVFLTAAKYPQVMMEST 210


>SB_40773| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 953

 Score = 36.7 bits (81), Expect = 0.019
 Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
 Frame = +1

Query: 376 IYRTEPDKIKFQQLRKLFTDRGPTFPY---HWDVPVACAMLKAFISELPESILTQELHGQ 546
           ++R   +K + ++L++L  DRG T       +      ++LK F+ ELPE +LTQ  +  
Sbjct: 77  LFRISGNKKRQEELKELI-DRGDTPKLGCGKFTAHDVASVLKQFLGELPEPLLTQAPYRA 135

Query: 547 FEQATAIAEPQREA----TMTNLINKLPNCNHNLLAWLMRHFQHVVSN 678
           + Q T I+  Q  A     +  L   +P  N +LL  L+   + V+ N
Sbjct: 136 YLQVTEISNDQGNAKHVEALQLLFLMIPPENRSLLHNLLELLKLVLEN 183


>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/40 (45%), Positives = 24/40 (60%)
 Frame = +3

Query: 330  RQHRLLTGTRIKI*RYIPDRTG*DKVSTTEEAVHGSRAYI 449
            R  R+LTG+R+ I R  PD    DK+S T+  +H  RA I
Sbjct: 1386 RDGRMLTGSRVAIGRQEPDCESHDKMS-TKCHLHVQRALI 1424


>SB_50370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1059

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/67 (25%), Positives = 25/67 (37%)
 Frame = +1

Query: 508 LPESILTQELHGQFEQATAIAEPQREATMTNLINKLPNCNHNLLAWLMRHFQHVVSNEQV 687
           LP  +  Q  H        +A          L N++ + NH   A  + H  HV    QV
Sbjct: 803 LPYQVANQVTHSNH---VTLANQVTHVNHVTLANQVTHANHVTHAGQVTHANHVTFANQV 859

Query: 688 NQANIKR 708
             AN+ +
Sbjct: 860 THANVNQ 866


>SB_7922| Best HMM Match : SMC_C (HMM E-Value=1.5e-08)
          Length = 493

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 683 CSLETTCWKCLISQASRLWLQFGSLLMRFVI-VASR*GSAIAVAC 552
           CS  T C+K  I+    LW +  +++ + VI V+SR G    + C
Sbjct: 159 CSGNTMCYKYFITAGCGLWSEVCNVVTQCVISVSSRQGVTCGLQC 203


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,816,986
Number of Sequences: 59808
Number of extensions: 380840
Number of successful extensions: 1014
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)