Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30299
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...   310   1e-85
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom...    31   0.22 
SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom...    30   0.29 
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    28   1.6  
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...    27   2.1  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   3.6  
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    27   3.6  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    27   3.6  
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    26   4.7  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    26   6.3  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    26   6.3  

>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score =  310 bits (761), Expect = 1e-85
 Identities = 142/216 (65%), Positives = 174/216 (80%), Gaps = 2/216 (0%)
 Frame = +2

Query: 80  PVVDILGDEMTRIIWDLIKEKLILPFLDIELHVYDLGMENRDKTDDQVTIDCAEAIKKYN 259
           PVV++ GDEMTR+IW +I+EKL+LP++DI+L  YDLG+E RDKT+DQ+T+D A+AI K +
Sbjct: 19  PVVEMDGDEMTRVIWKIIREKLVLPYMDIKLDYYDLGIEARDKTNDQITVDAAKAILKND 78

Query: 260 VGIKCATITPDEKRVEEFKLKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWDKPI 439
           VGIKCATITPDE RV+E+ LKKMWKSPNGTIRNIL GTVFRE I+ KNIP+ + GW  PI
Sbjct: 79  VGIKCATITPDEARVKEYNLKKMWKSPNGTIRNILNGTVFREPILIKNIPKYIPGWTNPI 138

Query: 440 IIGRHAHADQYKATDFVVPGAGTLEIIFKPESGEAIKHV--VHEYKGAGVALAMFNTDAS 613
            IGRHA  DQYK+TD V  G G LE+ F P+   + K    V+E+ G+GVA++M+NTD S
Sbjct: 139 CIGRHAFGDQYKSTDLVASGPGKLELSFTPKGNPSAKETYNVYEFNGSGVAMSMYNTDDS 198

Query: 614 IIDFAHSSFKFALDRKYPLYLSTKNTILKKYDGRFK 721
           I  FAHSSF+ AL +K PLYLSTKNTILKKYDGRFK
Sbjct: 199 IRGFAHSSFQMALQKKMPLYLSTKNTILKKYDGRFK 234


>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = +2

Query: 92  ILGDEMTRIIWDLIKEKLILPFLDIELHVYDL-GMENRDKTDDQVTIDCAEAIKKYNVGI 268
           I GD + R   + + E      + IE    D+ GME  +K+      +  +++K+  VG+
Sbjct: 26  IPGDGIGRETSNAVTEIFKTANVPIEFEEIDVTGMEKNNKSSGDALHEAIQSLKRNKVGL 85

Query: 269 KCATITPDEK 298
           K    TP EK
Sbjct: 86  KGILFTPFEK 95


>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
 Frame = -2

Query: 574 TLVLMNYMFYCLTRFRFEDYFKSTSTWDNKVSCF--------VLISMSMTSNDDGFVPPC 419
           +L   +Y + C T F    + K  ++ +    CF        + I   +  +D GFV P 
Sbjct: 237 SLFAHHYSYRCNTWFYLSKHMKKVASANMDAQCFYVQNSFYKITILYEIKFDDLGFVQPN 296

Query: 418 YKSRYILANNSLPENSTTKNITDGPIRAFPHFLQFKFF--NSLLI 290
           Y   YIL N +    S T  + +   + F  F+    F   SLL+
Sbjct: 297 YCISYILKNQNEKIVSITSKLLNQLDKRFSEFVSLFGFREGSLLL 341


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = +2

Query: 5   VPTNLKSTRLFIEVERYNMSKI--KAGPVVDILGDEMTRIIWDLIKEKLILPFLDIELHV 178
           VPTN   T L  + E   ++K   K   V   +G E+  + W +    LI   +D  L +
Sbjct: 95  VPTNTPITTLADDAEELALAKEYWKVKIVCRSMGSEIYDLCWSVDSNFLIAGAMDNSLRL 154

Query: 179 YD 184
           YD
Sbjct: 155 YD 156


>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/57 (22%), Positives = 26/57 (45%)
 Frame = +2

Query: 530 ESGEAIKHVVHEYKGAGVALAMFNTDASIIDFAHSSFKFALDRKYPLYLSTKNTILK 700
           +SG+ + H V  Y+G  +  A+   D +  D      K  ++R Y    + +  I++
Sbjct: 154 DSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAEREIVR 210


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -1

Query: 113 WSFHHQGCQQQVQPLF*TYCIFL 45
           W   H+G    V P F  YC FL
Sbjct: 721 WEIRHRGAFTSVYPCFIEYCSFL 743


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = -2

Query: 493 DNKVSCFVLISMSMTSNDDGFVPPCYKSRYILANNSLPENSTTKNITD 350
           D+K +   L+S +++S +   VPP  KSR I+A+ +   +S  K+  D
Sbjct: 536 DSKQTKVSLMSENLSSKEKTAVPPRQKSRDIIASVTDVISSLDKDFQD 583


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -2

Query: 661 FSVQSKLE*RMSKVNNRCISVKHSQ--CYTCTLVLMNYMFYCLTRFRFE 521
           F+ ++ L+  + + NN   +++ S   C TC  ++ N  F+C   F F+
Sbjct: 35  FTKENNLKSNIFEHNNNSPTLRSSSVACNTCLKIIRNDSFHCTKCFDFD 83


>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -3

Query: 171 NSMSKKG-RISFSLIRSQIILVISSPRMSTTGPAFILDILYLSTSMNKRVL 22
           N + K G  +  SL+++ +   +S    ST   AFI +  + STS N  VL
Sbjct: 9   NDLKKSGFMLRQSLLKTSVSNFLSLNASSTMSRAFIRNPKFYSTSSNDTVL 59


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 447 PMMMGLSHPVTSLGIFLQIIASLKTVP 367
           P +MG  + VT+   ++ II SLK +P
Sbjct: 253 PALMGYKNKVTAKATYMVIIQSLKHLP 279


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 140 KLILPFLDIELHVYDLGMENRDKTDDQVTIDCAEAIK 250
           +LI+ F D ELH +     N+   +     D AEA+K
Sbjct: 400 RLIMKFSDSELHTFLFHCVNKIVANTTENSDSAEAVK 436


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,039,901
Number of Sequences: 5004
Number of extensions: 66125
Number of successful extensions: 186
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)