Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30299
         (722 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)                     283   1e-76
SB_26442| Best HMM Match : Iso_dh (HMM E-Value=3.6e-37)               281   5e-76
SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_33334| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_7978| Best HMM Match : F5_F8_type_C (HMM E-Value=1.2e-22)           28   6.7  
SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)            28   8.8  
SB_41606| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_7874| Best HMM Match : PSI (HMM E-Value=8.4)                        28   8.8  
SB_4072| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.8  

>SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)
          Length = 644

 Score =  283 bits (694), Expect = 1e-76
 Identities = 128/195 (65%), Positives = 159/195 (81%), Gaps = 1/195 (0%)
 Frame = +2

Query: 140 KLILPFLDIELHVYDLGMENRDKTDDQVTIDCAEAIKKYNVGIKCATITPDEKRVEEFKL 319
           +LI P+LD+++  +DLG+E+RD T+D+VT++ AEAI+K++VGIKCATITPDE RVEEFKL
Sbjct: 19  QLISPYLDLDIKYFDLGLEHRDATNDKVTVEAAEAIRKHHVGIKCATITPDEARVEEFKL 78

Query: 320 KKMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWDKPIIIGRHAHADQYKATDFVVPG 499
           KKMWKSPNGTIRNILGGTVFR  IICK +PRLV GW+KPI+IGRHA  DQY+A DF V G
Sbjct: 79  KKMWKSPNGTIRNILGGTVFRAPIICKTVPRLVPGWEKPIVIGRHAFGDQYRARDFAVNG 138

Query: 500 AGTLEIIFKPESGEAIKHVVHEYKG-AGVALAMFNTDASIIDFAHSSFKFALDRKYPLYL 676
            G+ EI F PESG  +   V E+ G  GV + M+NTD +I DFAHS  ++A+ ++ PLY+
Sbjct: 139 PGSFEISFTPESGGKLTTEVFEFTGTGGVMMGMYNTDEAIRDFAHSCMQYAIHKQVPLYM 198

Query: 677 STKNTILKKYDGRFK 721
           STKNTILKKYDGRFK
Sbjct: 199 STKNTILKKYDGRFK 213


>SB_26442| Best HMM Match : Iso_dh (HMM E-Value=3.6e-37)
          Length = 296

 Score =  281 bits (688), Expect = 5e-76
 Identities = 132/173 (76%), Positives = 150/173 (86%), Gaps = 2/173 (1%)
 Frame = +2

Query: 164 IELHVYDLGMENRDKTDDQVTIDCAEAIKKYNVGIKCATITPDEKRVEEFKLKKMWKSPN 343
           +EL  YDL +ENRD T+DQVTID A AIK+ +VGIKCATITPDEKRVEEFKLKKMWKSPN
Sbjct: 1   MELKSYDLSIENRDATNDQVTIDAAAAIKQCHVGIKCATITPDEKRVEEFKLKKMWKSPN 60

Query: 344 GTIRNILGGTVFREAIICKNIPRLVTGWDKPIIIGRHAHADQYKATDFVVPGAGTLEIIF 523
           GTIRNILGGTVFREAIICKNIPRLV+ W KPIIIGRHAHADQYKATDFVVPG G +EI++
Sbjct: 61  GTIRNILGGTVFREAIICKNIPRLVSPWTKPIIIGRHAHADQYKATDFVVPGPGKVEIVY 120

Query: 524 KP-ESGEAIKHVVHEYK-GAGVALAMFNTDASIIDFAHSSFKFALDRKYPLYL 676
            P + GE IK+ V+E+K G GV + MFNTD SI  FAHSSF++ALD+KYPLY+
Sbjct: 121 SPADGGEPIKYTVNEFKDGGGVTMGMFNTDVSIRAFAHSSFQYALDKKYPLYM 173


>SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1378

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = +2

Query: 188 GMENRDKTDDQVTIDCAEAIKKYNVGIKCATITPDEKRVEEFKLKKMWKSPNGTIRNILG 367
           G+ +RD   D + +     +K  + G  CATITP++ +         W +P    R   G
Sbjct: 336 GVIHRDIKSDNILLGMDGQVKLTDFGF-CATITPEQNKRSTMVGTPYWMAPEVVTRKQYG 394

Query: 368 GTV 376
             V
Sbjct: 395 PRV 397


>SB_33334| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/56 (23%), Positives = 27/56 (48%)
 Frame = +2

Query: 305 EEFKLKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWDKPIIIGRHAHADQY 472
           EE     M   P   +   +G +  ++  + +N+ RL+  +D P+++ R  H D +
Sbjct: 461 EELMNLNMKNGPQRLVSLDVGTSWDQKERVFRNLARLIGPYDDPVLVHRWVHGDAF 516


>SB_7978| Best HMM Match : F5_F8_type_C (HMM E-Value=1.2e-22)
          Length = 1151

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 22/88 (25%), Positives = 38/88 (43%)
 Frame = -2

Query: 697 ENCILSA*VQRVFSVQSKLE*RMSKVNNRCISVKHSQCYTCTLVLMNYMFYCLTRFRFED 518
           E C + A ++   S    ++    +  N+CI+         TL++M  M      F+ +D
Sbjct: 406 EGCKVQARIRTYVSPLKHMQKAQCEGLNQCINEPQETRTYSTLLIMTTMIMTTIVFKSDD 465

Query: 517 YFKSTSTWDNKVSCFVLISMSMTSNDDG 434
                   DN +   +LI M++  NDDG
Sbjct: 466 ----DDNDDNNI--IILIMMTIAINDDG 487


>SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1743

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/71 (22%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
 Frame = +2

Query: 116 IIWDLIKEKLILPFLDIELHV-----YDLGMEN-RDKTDDQVTIDCAEAIKKYNVGIKCA 277
           ++  + K+K +LP++ +E+ +      DL  +  R  T++ V +    A+K     ++ +
Sbjct: 574 VVCRVFKDKHLLPWIGVEIALNVLRNVDLTRDELRCITNEDVPLATVSAVKMVQFNLQKS 633

Query: 278 TITPDEKRVEE 310
            + P+E+RV +
Sbjct: 634 DVEPNEQRVRQ 644


>SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)
          Length = 642

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +2

Query: 143 LILPFLDIELHVYDLGMENRDKTDDQVTIDCAEAIKKYNVGIKCA 277
           L+L  L +E+    LG  N+DK    +T D    IK+Y    K A
Sbjct: 442 LLLIVLGLEIAAAVLGYINKDKIQSDLTDDIIRNIKEYPKNNKAA 486


>SB_41606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1144

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/71 (22%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
 Frame = +2

Query: 116 IIWDLIKEKLILPFLDIELHV-----YDLGMEN-RDKTDDQVTIDCAEAIKKYNVGIKCA 277
           ++  + K+K +LP++ +E+ +      DL  ++ R  T++ V +    A+K     ++ +
Sbjct: 690 VVCRVFKDKHLLPWIGVEIALNVLRNVDLTRDDLRWITNEDVPLATVSAVKMVQFNLQKS 749

Query: 278 TITPDEKRVEE 310
            + P+E+RV +
Sbjct: 750 DVEPNEQRVRQ 760


>SB_7874| Best HMM Match : PSI (HMM E-Value=8.4)
          Length = 275

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/57 (24%), Positives = 30/57 (52%)
 Frame = +2

Query: 302 VEEFKLKKMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWDKPIIIGRHAHADQY 472
           +  F L    K+P+ T+    G +  ++  + +N+ RL+  +D P+++ R  H D +
Sbjct: 37  LNRFPLNHDVKTPSFTV----GTSWDQKERVFRNLARLIGPYDDPVLVHRWVHGDAF 89


>SB_4072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1364

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/71 (22%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
 Frame = +2

Query: 116 IIWDLIKEKLILPFLDIELHV-----YDLGMEN-RDKTDDQVTIDCAEAIKKYNVGIKCA 277
           ++  + K+K +LP++ +E+ +      DL  +  R  T++ V +    A+K     ++ +
Sbjct: 688 VVCRVFKDKHLLPWIGVEIALNVLRNVDLTRDELRCITNEDVPLATVSAVKMVQFNLQKS 747

Query: 278 TITPDEKRVEE 310
            + P+E+RV +
Sbjct: 748 DVKPNEQRVRQ 758


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,297,275
Number of Sequences: 59808
Number of extensions: 493332
Number of successful extensions: 1178
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1170
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)