Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30298
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc...    27   4.0  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    25   9.3  

>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -2

Query: 492 PAKNNSVCTGGKTCCKLARLPPFYQFMPQSSHVLWFESL 376
           PA       GG+T CK   +  F +++P+   ++   S+
Sbjct: 85  PATKVGAIVGGQTSCKAPEMNAFEKYLPEDVDIISCHSM 123


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1347

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +1

Query: 109  PVTGTCS*YF*TNSVWSYRSKQNLDGSLNTTCISLSEL 222
            PVT T +  F   S W  R+++NL  + NTT  SL EL
Sbjct: 1067 PVTATIT--FDKTSPW--RNRENLSHNNNTTRASLREL 1100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,849,912
Number of Sequences: 5004
Number of extensions: 52592
Number of successful extensions: 93
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)