Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30298
         (787 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5366| Best HMM Match : LRR_1 (HMM E-Value=0.00075)                  29   4.3  
SB_33793| Best HMM Match : 7tm_1 (HMM E-Value=9.99967e-42)             28   9.9  

>SB_5366| Best HMM Match : LRR_1 (HMM E-Value=0.00075)
          Length = 310

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 168 RSIRPHRICLKVLTTCSRHRQPTRVIEPTCPKKYLLLSK 52
           R+ R HR C ++ T  SR  +P   + P  P +  L S+
Sbjct: 105 RNARSHRFCPRMQTALSRDDKPVSTVPPDTPIQKWLYSE 143


>SB_33793| Best HMM Match : 7tm_1 (HMM E-Value=9.99967e-42)
          Length = 315

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -3

Query: 119 PVTGSQQG**SRHVLKNIYCCLNKSKPSKTLDKQTE 12
           PV  +  G   RH LK +  CL K KP +T D+ T+
Sbjct: 280 PVIYTLHGQRYRHYLKKLLICLRK-KPKQTRDEDTK 314


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,214,702
Number of Sequences: 59808
Number of extensions: 388917
Number of successful extensions: 648
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)