Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30298
         (787 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29381-7|AAA68755.1|  225|Caenorhabditis elegans Hypothetical pr...    29   5.0  

>U29381-7|AAA68755.1|  225|Caenorhabditis elegans Hypothetical
           protein F35D11.9 protein.
          Length = 225

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
 Frame = +2

Query: 8   RFLSVCQAFLTA*IYLDSNRYFLGHVGSITLVGCR*REHVVN--TFKQILCGRIDL 169
           RF   C A   A  Y  +  +F    G   L+GC   +   N   +  +LCGR  L
Sbjct: 170 RFTRDCNALTDAYYYFSNGTHFYAVDGRTELLGCFGEKDKQNKHEYSSVLCGRFPL 225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,762,781
Number of Sequences: 27780
Number of extensions: 293648
Number of successful extensions: 574
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)