Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30297
(674 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 29 0.61
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz... 29 0.81
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 27 2.5
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom... 26 5.7
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|... 25 7.6
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo... 25 7.6
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po... 25 7.6
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch... 25 7.6
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch... 25 10.0
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 25 10.0
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 29.1 bits (62), Expect = 0.61
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 547 SLPFNPDSIPSPQDTAEAIDILTSHITSTLDRSSKQ 654
S+ F+P+S P P+DT D+ + + D S Q
Sbjct: 418 SVQFHPESTPGPRDTEFLFDVFIDVVKRSADAKSLQ 453
>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 504
Score = 28.7 bits (61), Expect = 0.81
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +1
Query: 130 LPPDKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNG 261
L P+K+ +E + G IL D + WNS T TP G
Sbjct: 212 LEPNKLDEGMFLEGIGAGGIGRILIADFGFSKVVWNSKTATPCG 255
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +1
Query: 25 LHCVPLDPPALANIEASVCRISLTGHAPIVIASVYLPPDKIVLS 156
L CV P++ E +C+ + TGH +++ P K ++S
Sbjct: 487 LQCVSNVAPSMYK-EGGICKQTFTGHKDFILSVTVSPDGKWIIS 529
>SPCC663.10 |||methyltransferase, DUF1613 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 502
Score = 25.8 bits (54), Expect = 5.7
Identities = 20/67 (29%), Positives = 29/67 (43%)
Frame = +1
Query: 85 ISLTGHAPIVIASVYLPPDKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGR 264
I L H P +SV + D I+ S + +++L SV D + RW P
Sbjct: 52 IELVYH-PERTSSVIMRTDIILDSQEDDSILNKQKSVFENLDERYQISRWIDRRIIPRNT 110
Query: 265 RLDALVD 285
LDA +D
Sbjct: 111 NLDATMD 117
>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 712
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +1
Query: 457 LGRAPDSVPVTRTVVDWHTLGIS--LAESDPPSLPFNP 564
+ PD+ +V WHT GI+ A D P +P P
Sbjct: 604 IAEEPDASVDNTDIVVWHTFGITHFPAPEDFPLMPAEP 641
>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
Srk1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 580
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +1
Query: 136 PDKIVLSSDIEALLGMGSSVI---LAGDLNCKHIRWNSHTTTPNG 261
PDK+ + E + G+G+ I D + W+SHT TP G
Sbjct: 284 PDKV---DEGEFIPGVGAGTIGRIRLADFGLSKVVWDSHTQTPCG 325
>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 568 SIPSPQDTAEAIDILTSHITSTLD 639
S+PSP +AE ++ LT H+ S +D
Sbjct: 241 SLPSPLFSAEFLNGLTDHMDSGID 264
>SPAC26H5.04 |||vacuolar import and degradation protein
Vid28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 729
Score = 25.4 bits (53), Expect = 7.6
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +1
Query: 187 SSVILAGDLNCKHIRWNSHTTTPN--GRRLDALVDDLAFDIVAPLTPTHYPLNIAHRPDI 360
S ++LAG C +I W T+P+ + +++ +L F + H ++ R +
Sbjct: 661 SEILLAGIWLCINILWPKQCTSPSQEDKERASILQNLGFGECLQMLQNHSSPDVRER--V 718
Query: 361 LDIALLKNVT 390
D + NVT
Sbjct: 719 KDALMYINVT 728
>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
Rga5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 25.0 bits (52), Expect = 10.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 78 VPNLTDGTRADRYRVRL 128
+PNLTD R + YR R+
Sbjct: 155 IPNLTDNERVEMYRRRI 171
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.0 bits (52), Expect = 10.0
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +1
Query: 544 PSLPFN--PDSIPSPQDTAEAIDILTSHITSTL 636
PSL N S+P+P +A +++++ H T+ L
Sbjct: 306 PSLSTNNTATSVPAPYSSAASVNVVPGHATTIL 338
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,552,148
Number of Sequences: 5004
Number of extensions: 49113
Number of successful extensions: 165
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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