Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30297
         (674 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1339 + 25879246-25881154,25881502-25881696,25881777-258819...    31   1.1  
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767...    30   1.5  
11_01_0613 + 4904869-4905126,4905389-4906138,4907708-4907767           29   2.6  
09_03_0058 + 11950668-11950701,11951068-11951106,11951586-119519...    29   3.4  
03_06_0614 - 35099225-35099461,35099545-35099694,35099919-351000...    29   4.5  
08_01_0867 + 8458570-8459168,8460128-8460313,8462684-8463167           28   5.9  

>07_03_1339 +
           25879246-25881154,25881502-25881696,25881777-25881928,
           25882147-25882607,25883723-25883810,25884066-25884135,
           25884288-25884361,25884456-25884524,25884647-25884724,
           25884946-25885070,25885168-25885240,25885508-25885566,
           25885650-25886027,25886134-25886236,25886332-25886544
          Length = 1348

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +1

Query: 499 VDWHTLGISLAESDPPSLPFNPDSIPSPQDTAEAIDILTSHITST 633
           VD H +   L    PP  P NP +  +P   ++A  I+  H   T
Sbjct: 784 VDPHEVKAKLEPPPPPPAPINPTAATAPSHQSKANQIMPPHAADT 828


>03_03_0008 - 13674602-13674708,13675272-13675439,13676169-13676787,
            13676868-13677330,13677855-13678036,13678093-13678235,
            13678315-13678423,13679000-13679456,13680490-13682473,
            13682507-13682626,13682920-13682971
          Length = 1467

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/63 (31%), Positives = 25/63 (39%)
 Frame = +1

Query: 469  PDSVPVTRTVVDWHTLGISLAESDPPSLPFNPDSIPSPQDTAEAIDILTSHITSTLDRSS 648
            P+ +       D HTLG  L +  PPS P  P S P       A    T  +  TL  +S
Sbjct: 1099 PEQIDTKCRTSDRHTLGPPLPDDRPPSPPPLPSSPPPVPPPPPAPITQTGQLQRTLPMAS 1158

Query: 649  KQV 657
              V
Sbjct: 1159 DPV 1161


>11_01_0613 + 4904869-4905126,4905389-4906138,4907708-4907767
          Length = 355

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 508 HTLGISLAESDPPSLPFNPDSIPSP 582
           H +G++L    PP LP NP + P+P
Sbjct: 61  HIVGVALPLPLPPPLPLNPRATPAP 85


>09_03_0058 +
           11950668-11950701,11951068-11951106,11951586-11951982,
           11952016-11952314,11953743-11956795
          Length = 1273

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/77 (23%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
 Frame = +1

Query: 85  ISLTGHAPIV-IASVYLPPDKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNG 261
           I L+G   I+ ++  ++PP  +  ++ ++ALL  G   ++ G++    +R   H T    
Sbjct: 170 IELSGPLEILSLSGAFMPPPSLANATGLKALLAGGQGQVIGGNV-VGALRARGHVTI--- 225

Query: 262 RRLDALVDDLAFDIVAP 312
             L A+V ++ ++ ++P
Sbjct: 226 --LAAVVSNVTYECLSP 240


>03_06_0614 -
           35099225-35099461,35099545-35099694,35099919-35100066,
           35100152-35100231,35100428-35100594,35100692-35100940,
           35101025-35102310,35102423-35102544,35102946-35103272
          Length = 921

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 528 QADAQRVPIHHSPRDGNG-IGSATELHNDGT 439
           Q   + +P+H  PRDG G  G   E H+ GT
Sbjct: 212 QCKEEPLPLHEPPRDGGGSAGEEEEEHDVGT 242


>08_01_0867 + 8458570-8459168,8460128-8460313,8462684-8463167
          Length = 422

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 232 WNSHTTTPNGRRLDALVDD 288
           W SH T   GRRLDA++ D
Sbjct: 395 WTSHMTPEMGRRLDAILRD 413


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,346,703
Number of Sequences: 37544
Number of extensions: 382920
Number of successful extensions: 1068
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)