Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30297
         (674 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC112035-1|AAI12036.1|  526|Homo sapiens podocalyxin-like, precu...    30   6.5  
BC093730-1|AAH93730.1|  526|Homo sapiens podocalyxin-like protein.     30   6.5  
AK223573-1|BAD97293.1|  526|Homo sapiens podocalyxin-like precur...    30   6.5  

>BC112035-1|AAI12036.1|  526|Homo sapiens podocalyxin-like,
           precursor isoform 2 protein.
          Length = 526

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +1

Query: 535 SDPPSLPFNPDSIPSPQDTAEAIDILTSHITSTLDRSSKQVVAED 669
           S PP LP +P   PSP   A      +S+ T+    SS  ++A D
Sbjct: 15  STPPLLPSSPSPSPSPSQNATQTTTDSSNKTAPTPASSVTIMATD 59


>BC093730-1|AAH93730.1|  526|Homo sapiens podocalyxin-like protein.
          Length = 526

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +1

Query: 535 SDPPSLPFNPDSIPSPQDTAEAIDILTSHITSTLDRSSKQVVAED 669
           S PP LP +P   PSP   A      +S+ T+    SS  ++A D
Sbjct: 15  STPPLLPSSPSPSPSPSQNATQTTTDSSNKTAPTPASSVTIMATD 59


>AK223573-1|BAD97293.1|  526|Homo sapiens podocalyxin-like precursor
           variant protein.
          Length = 526

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +1

Query: 535 SDPPSLPFNPDSIPSPQDTAEAIDILTSHITSTLDRSSKQVVAED 669
           S PP LP +P   PSP   A      +S+ T+    SS  ++A D
Sbjct: 15  STPPLLPSSPSPSPSPSQNATQTTTDSSNKTAPTPASSVTIMATD 59


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,526,236
Number of Sequences: 237096
Number of extensions: 1949015
Number of successful extensions: 8875
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8874
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7615267504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)