Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30297
         (674 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g27740.1 68416.m03463 carbamoyl-phosphate synthase [glutamine...    29   3.8  
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ...    28   5.0  
At1g14610.1 68414.m01737 valyl-tRNA synthetase / valine--tRNA li...    28   5.0  
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit...    27   8.7  

>At3g27740.1 68416.m03463 carbamoyl-phosphate synthase
           [glutamine-hydrolyzing] (CARA) / glutamine-dependent
           carbamoyl-phosphate synthase small subunit identical to
           carbamoyl phosphate synthetase small subunit GI:2462781
           [Arabidopsis thaliana]
          Length = 430

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +1

Query: 421 ELDSDHRPVVMKLGRAPDSVPVTRTVV-DWHTLGISLAESDPPSLPFNPDSIPSPQDTAE 597
           E+ + +    +     P  V VT   + D    G+S  E +  SL ++P++ P P D+  
Sbjct: 355 EISAQNHNYAVDPASLPGGVEVTHVNLNDGSCAGLSFPEMNVMSLQYHPEASPGPHDSDN 414

Query: 598 A 600
           A
Sbjct: 415 A 415


>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
           CDC48, putative very strong similarity to SP|P54609 Cell
           division cycle protein 48 homolog {Arabidopsis
           thaliana}; contains Pfam profiles PF00004: ATPase AAA
           family, PF02359: Cell division protein 48 (CDC48)
           N-terminal domain; supporting cDNA
           gi|26449351|dbj|AK117125.1|
          Length = 810

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
 Frame = +1

Query: 322 THYPLNIAHRPDILDIALLKNVTLRLHSIEVVSELDSDHRPVVMK--LGRAPDSVPVTRT 495
           T + +   +RPDI+D ALL+    RL  +  +   D D R  + K  L ++P +  V  T
Sbjct: 619 TVFIIGATNRPDIIDSALLR--PGRLDQLIYIPLPDEDSRLNIFKACLRKSPVAKDVDVT 676

Query: 496 VVDWHTLGISLAE 534
            +  +T G S A+
Sbjct: 677 ALAKYTQGFSGAD 689


>At1g14610.1 68414.m01737 valyl-tRNA synthetase / valine--tRNA
           ligase (VALRS) nearly identical to SP|P93736 Valyl-tRNA
           synthetase (EC 6.1.1.9) (Valine--tRNA ligase) (ValRS)
           {Arabidopsis thaliana}
          Length = 1108

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
 Frame = +1

Query: 145 IVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDI-----VA 309
           IV ++ +E +LG  +  I   D   KH+         NGR+L  + D +  D        
Sbjct: 363 IVATTRVETMLGDTAIAIHPDDARYKHLHGKFAVHPFNGRKLPIICDGILVDPNFGTGCV 422

Query: 310 PLTPTHYP 333
            +TP H P
Sbjct: 423 KITPAHDP 430


>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
           family protein low similarity to extensin [Volvox
           carteri] GI:21992
          Length = 312

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 523 SLAESDPPSLPFNPDSIPSPQDTAEAIDILTSHITSTLDRSS 648
           SL+ S PP L  +P S P P  ++  +  L+  ++ +   SS
Sbjct: 52  SLSPSSPPPLSLSPSSPPPPPPSSSPLSSLSPSLSPSPPSSS 93


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,865,315
Number of Sequences: 28952
Number of extensions: 279186
Number of successful extensions: 802
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)