Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30296
(757 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53611| Best HMM Match : Homeobox (HMM E-Value=1.2e-25) 29 3.1
SB_7018| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_45111| Best HMM Match : rve (HMM E-Value=1.2e-24) 29 4.1
SB_10771| Best HMM Match : DUF1610 (HMM E-Value=0.74) 29 4.1
SB_6092| Best HMM Match : DUF1610 (HMM E-Value=0.74) 29 4.1
SB_4294| Best HMM Match : DUF622 (HMM E-Value=7) 29 4.1
SB_51918| Best HMM Match : DUF1610 (HMM E-Value=0.74) 29 4.1
SB_28434| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_10348| Best HMM Match : DUF1610 (HMM E-Value=0.74) 29 4.1
SB_36583| Best HMM Match : rve (HMM E-Value=9.4e-19) 28 7.1
SB_39896| Best HMM Match : DUF1018 (HMM E-Value=1.7) 28 9.4
>SB_53611| Best HMM Match : Homeobox (HMM E-Value=1.2e-25)
Length = 389
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -3
Query: 425 SRRALIHKHYTSATCECVERVLHGRRSGGCSV 330
SRR L + Y SA CEC RV + CS+
Sbjct: 62 SRRRLSYVQYASAVCECSMRVQYASAVCECSM 93
>SB_7018| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 425
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 513 YKYSVI-LFYYCFNIKLLLSNYNCIN**KCYAIVLPWQSPSVTHVFYD*NITTM 671
Y YS+ L+YY ++I L Y+ N Y+I + + S+T ++Y +IT +
Sbjct: 15 YAYSITDLYYYAYSITDLYYAYSITNLYYAYSITDLYYAYSITDLYYVYSITDL 68
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +3
Query: 513 YKYSVILFYYCFNIKLLLSNYNCIN**KCYAIVLPWQSPSVTHVFYD*NIT 665
Y YS+ YY ++I L Y+ + Y+I + + S+T ++Y NIT
Sbjct: 247 YAYSITDLYYAYSITDLYYAYSITDLYYAYSITDLYYAYSITDLYYAFNIT 297
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +3
Query: 513 YKYSVILFYYCFNIKLLLSNYNCIN**KCYAIVLPWQSPSVTHVFYD*NITTM 671
Y YS+ YY ++I L Y+ + Y+I + + S+T ++Y +IT +
Sbjct: 34 YAYSITNLYYAYSITDLYYAYSITDLYYVYSITDLYYADSITDLYYAYSITDL 86
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +3
Query: 513 YKYSVILFYYCFNIKLLLSNYNCIN**KCYAIVLPWQSPSVTHVFYD*NITTM 671
Y YS+ YY ++I L Y+ + Y+I + + S+T ++Y +IT +
Sbjct: 220 YTYSITDLYYAYSITDLYYAYSITDLYYAYSITDLYYAYSITDLYYAYSITDL 272
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +3
Query: 513 YKYSVILFYYCFNIKLLLSNYNCIN**KCYAIVLPWQSPSVTHVFYD*NITTM 671
Y YS+ YY ++I L Y+ + Y+I + + S+T ++Y +IT +
Sbjct: 229 YAYSITDLYYAYSITDLYYAYSITDLYYAYSITDLYYAYSITDLYYAYSITDL 281
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +3
Query: 513 YKYSVILFYYCFNIKLLLSNYNCIN**KCYAIVLPWQSPSVTHVFYD*NITTM 671
Y YS+ YY ++I L Y+ + Y+I + + S+T ++Y +IT +
Sbjct: 238 YAYSITDLYYAYSITDLYYAYSITDLYYAYSITDLYYAYSITDLYYAYSITDL 290
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +3
Query: 513 YKYSVILFYYCFNIKLLLSNYNCIN**KCYAIVLPWQSPSVTHVFYD*NITTM 671
Y YS+ YY ++I L Y+ + Y+I + + S+T ++Y +IT +
Sbjct: 319 YAYSITDLYYAYSIADLYYAYSITDLYYAYSITDLYYAYSITDLYYAYSITDL 371
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +3
Query: 513 YKYSVILFYYCFNIKLLLSNYNCIN**KCYAIVLPWQSPSVTHVFYD*NITTM 671
Y YS+ YY ++I L Y+ + Y+I + + S+T ++Y +IT +
Sbjct: 328 YAYSIADLYYAYSITDLYYAYSITDLYYAYSITDLYYAYSITDLYYAYSITDL 380
>SB_45111| Best HMM Match : rve (HMM E-Value=1.2e-24)
Length = 1575
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -2
Query: 429 DVTPRSYSQTLHKC 388
DVTPRSY Q HKC
Sbjct: 391 DVTPRSYCQMYHKC 404
>SB_10771| Best HMM Match : DUF1610 (HMM E-Value=0.74)
Length = 288
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -2
Query: 429 DVTPRSYSQTLHKC 388
DVTPRSY Q HKC
Sbjct: 18 DVTPRSYCQMYHKC 31
>SB_6092| Best HMM Match : DUF1610 (HMM E-Value=0.74)
Length = 469
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -2
Query: 429 DVTPRSYSQTLHKC 388
DVTPRSY Q HKC
Sbjct: 184 DVTPRSYCQMYHKC 197
>SB_4294| Best HMM Match : DUF622 (HMM E-Value=7)
Length = 360
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 352 LPCSTRSTHSHVALV*CL*IRARRDVALHPHH 447
+PCST +TH+H+ L C I VA+ P H
Sbjct: 205 IPCSTNNTHNHINLA-CSSIPIAPAVAVGPVH 235
>SB_51918| Best HMM Match : DUF1610 (HMM E-Value=0.74)
Length = 378
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -2
Query: 429 DVTPRSYSQTLHKC 388
DVTPRSY Q HKC
Sbjct: 189 DVTPRSYCQMYHKC 202
>SB_28434| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -2
Query: 429 DVTPRSYSQTLHKC 388
DVTPRSY Q HKC
Sbjct: 271 DVTPRSYCQMYHKC 284
>SB_10348| Best HMM Match : DUF1610 (HMM E-Value=0.74)
Length = 637
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -2
Query: 429 DVTPRSYSQTLHKC 388
DVTPRSY Q HKC
Sbjct: 466 DVTPRSYCQMYHKC 479
>SB_36583| Best HMM Match : rve (HMM E-Value=9.4e-19)
Length = 435
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 277 IAGFERGDRIKKIRNENKTEHPPLRLPCSTRS 372
+ GF D IK R KTE PPL +P R+
Sbjct: 375 MTGFAPKDAIKLRRVPFKTEKPPLEVPLEVRT 406
>SB_39896| Best HMM Match : DUF1018 (HMM E-Value=1.7)
Length = 318
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 277 IAGFERGDRIKKIRNENKTEHPPLRLPCSTRSTHSH 384
+ GF D IK R K E PPL +P R+ H
Sbjct: 238 MTGFTPKDAIKLRRVPLKAEEPPLEVPLEVRTEGLH 273
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,204,151
Number of Sequences: 59808
Number of extensions: 336560
Number of successful extensions: 853
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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