Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30296
         (757 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AL032646-2|CAA21677.1|  260|Caenorhabditis elegans Hypothetical ...    29   2.7  
AF326937-1|AAG49387.1|  260|Caenorhabditis elegans 2P40 protein.       29   2.7  
U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defe...    28   8.2  
U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defe...    28   8.2  
AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-ty...    28   8.2  

>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 668 SCDVSVIKNMCDTRGLPR*NYCI 600
           +CD+SV   +CDT G+   N C+
Sbjct: 923 NCDISVFSPVCDTEGVTHANMCL 945


>AL032646-2|CAA21677.1|  260|Caenorhabditis elegans Hypothetical
           protein Y54E2A.3 protein.
          Length = 260

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 437 CSATSRRALIHKHYTSATCECVERVLH 357
           C AT    ++ KH T A  E +ER+LH
Sbjct: 48  CGATRGDIIVMKHTTKALTELIERLLH 74


>AF326937-1|AAG49387.1|  260|Caenorhabditis elegans 2P40 protein.
          Length = 260

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 437 CSATSRRALIHKHYTSATCECVERVLH 357
           C AT    ++ KH T A  E +ER+LH
Sbjct: 48  CGATRGDIIVMKHTTKALTELIERLLH 74


>U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defective
            protein 19,isoform a protein.
          Length = 1783

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +2

Query: 662  HNYASTYF--YLLLCYILSINLYIKNK**NFDY 754
            +N+A  YF  + +LC  L INL++     NFDY
Sbjct: 1338 NNFAYPYFISFFMLCSFLVINLFVAVIMDNFDY 1370


>U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defective
            protein 19,isoform b protein.
          Length = 1877

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +2

Query: 662  HNYASTYF--YLLLCYILSINLYIKNK**NFDY 754
            +N+A  YF  + +LC  L INL++     NFDY
Sbjct: 1338 NNFAYPYFISFFMLCSFLVINLFVAVIMDNFDY 1370


>AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-type
            calcium channelalpha 1 subunit protein.
          Length = 1783

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +2

Query: 662  HNYASTYF--YLLLCYILSINLYIKNK**NFDY 754
            +N+A  YF  + +LC  L INL++     NFDY
Sbjct: 1338 NNFAYPYFISFFMLCSFLVINLFVAVIMDNFDY 1370


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,531,206
Number of Sequences: 27780
Number of extensions: 259695
Number of successful extensions: 534
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)