Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30295
(695 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0812 + 23383704-23384143,23384902-23385247 277 5e-75
07_01_1201 - 11419851-11419913,11420090-11420311 32 0.38
03_06_0376 + 33479776-33479958,33481055-33481236,33481345-334814... 30 1.5
03_03_0091 - 14371528-14372661 30 2.0
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26... 29 2.7
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555... 29 4.7
04_01_0618 - 8094991-8097288 28 8.1
03_03_0268 + 16047211-16047213,16047349-16047547,16047681-16047922 28 8.1
02_05_0634 + 30513920-30514136,30514674-30514717,30515547-305155... 28 8.1
>12_02_0812 + 23383704-23384143,23384902-23385247
Length = 261
Score = 277 bits (680), Expect = 5e-75
Identities = 124/182 (68%), Positives = 153/182 (84%)
Frame = +1
Query: 148 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 327
MGRVIRAQRKGAGSVF SHT RKG + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAK 60
Query: 328 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 507
V FR P+++K +KELF+A EG+YTGQFVYCG++ATL +GNV+P+ ++PEG +VCN+E +
Sbjct: 61 VTFRHPFRYKHQKELFVAAEGMYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHV 120
Query: 508 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPIL 687
GDRG ARASG++A VI HNPD +R+KLPSGAKK++PSS R M+G VAGGGR +KP+L
Sbjct: 121 GDRGVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRAMIGQVAGGGRTEKPML 180
Query: 688 KA 693
KA
Sbjct: 181 KA 182
>07_01_1201 - 11419851-11419913,11420090-11420311
Length = 94
Score = 32.3 bits (70), Expect = 0.38
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = -1
Query: 674 SIRPPPATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSS 495
++ PPP +P +P R+ P G +G P A R+P +P+F S
Sbjct: 12 ALLPPPPPLPALPQGQQWRS-TGPTGKLCFCSFPAGALPPAAGAGQPAPDRQPATPLFPS 70
Query: 494 RL 489
R+
Sbjct: 71 RV 72
>03_06_0376 +
33479776-33479958,33481055-33481236,33481345-33481469,
33481858-33482057,33482629-33482762,33483095-33483158,
33483764-33484441,33484723-33484839
Length = 560
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -3
Query: 144 YDPSLKDFIKSN*LNVGLSFSLYISYPVIKFKD 46
YD L D K+ L + LS +Y+ PVIKFKD
Sbjct: 366 YDCILDDETKNIFLPIHLSEEVYVGDPVIKFKD 398
>03_03_0091 - 14371528-14372661
Length = 377
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Frame = -1
Query: 662 PPATIPTMPLLLDGRTFLAPDGS-FTLVRLASGLCPITVAKFPEARARRP-LSPIFSSRL 489
PPA P D P G+ T G+ P + A A A L+P+F +
Sbjct: 254 PPAPAPAPVKAEDALPHFFPQGAAVTATAHVHGVDPASAAASAAANAEGGILAPLFKEMV 313
Query: 488 HTMVPSGIAPTGITFP 441
M+ +G+AP + P
Sbjct: 314 RAMLTAGMAPPSLEPP 329
>06_01_0026 +
265755-265968,267319-267468,267694-267738,267786-268460,
268779-268843,268854-269073,269163-269438,269547-269663,
269776-269853,269930-270184,270235-270323,270403-270816
Length = 865
Score = 29.5 bits (63), Expect = 2.7
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3
Query: 534 LWKLRHCDWT 563
LWK RHCDWT
Sbjct: 73 LWKCRHCDWT 82
>01_07_0112 -
41149461-41151674,41151688-41153265,41154344-41155507,
41155807-41156293,41156603-41156759,41157303-41157378
Length = 1891
Score = 28.7 bits (61), Expect = 4.7
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = -2
Query: 565 CVQSQWRSFQRHVPDDLYHPFSLQDCTQWY 476
C W++ H+P L H + +C WY
Sbjct: 73 CSCGLWKATTHHLPSALCHGLNYVNCAMWY 102
>04_01_0618 - 8094991-8097288
Length = 765
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 339 RSIQVQDKEGALHCSRRALHRPICLLW 419
R Q+ D++ + C+ R +P CLLW
Sbjct: 434 RRNQMVDQQSVIWCAARMTKKPNCLLW 460
>03_03_0268 + 16047211-16047213,16047349-16047547,16047681-16047922
Length = 147
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +1
Query: 565 NPDAKRTRVKLPS--GAKKVLPSSNRGMVGIVAGGGRIDKPI 684
+P + RTR PS GA K ++ +G+ GG R+ PI
Sbjct: 45 SPTSTRTRTSTPSAPGAAKAASPNHVRAIGVREGGARLVGPI 86
>02_05_0634 +
30513920-30514136,30514674-30514717,30515547-30515595,
30515663-30515835
Length = 160
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 128 KIL*NLINST*D*AFRYIFHIRL*NLKTVYFDLI 27
K+ N++ S + YIFH + NLK VY+ L+
Sbjct: 127 KLSINVLQSNTERPVYYIFHFLVHNLKAVYYGLV 160
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,259,041
Number of Sequences: 37544
Number of extensions: 418622
Number of successful extensions: 1107
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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