Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30295
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)             280   5e-76
At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso...   275   2e-74
At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso...   272   1e-73
At2g44065.2 68415.m05480 ribosomal protein L2 family protein sim...    52   5e-07
At2g44065.1 68415.m05479 ribosomal protein L2 family protein sim...    52   5e-07
At3g27500.1 68416.m03438 DC1 domain-containing protein contains ...    32   0.32 
At4g00450.1 68417.m00062 expressed protein                             30   1.7  
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast...    27   9.0  
At3g12000.1 68416.m01486 S-locus related protein SLR1, putative ...    27   9.0  
At2g22730.1 68415.m02694 transporter-related low similarity to s...    27   9.0  

>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 
          Length = 258

 Score =  280 bits (687), Expect = 5e-76
 Identities = 127/182 (69%), Positives = 154/182 (84%)
 Frame = +1

Query: 148 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 327
           MGRVIRAQRKGAGSVF SHT  RKG  K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60

Query: 328 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 507
           V FR P++FK +KELF+A EG+YTGQF+YCGKKATL VGNV+P+ ++PEG +VCN+E  +
Sbjct: 61  VTFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHV 120

Query: 508 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPIL 687
           GDRG LARASG++A VI HNPD+  TR+KLPSG+KK++PS  R M+G VAGGGR +KP+L
Sbjct: 121 GDRGVLARASGDYAIVIAHNPDSDTTRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPML 180

Query: 688 KA 693
           KA
Sbjct: 181 KA 182


>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
           protein L8, cytosolic, tomato, PIR1:R5TOL8
          Length = 258

 Score =  275 bits (675), Expect = 2e-74
 Identities = 124/182 (68%), Positives = 152/182 (83%)
 Frame = +1

Query: 148 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 327
           MGRVIRAQRKGAGSVF SHT  RKG  K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60

Query: 328 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 507
           V FR P++FK +KELF+A EG+YTGQF+YCGKKATL VGNV+P+ ++PEG ++CN+E  +
Sbjct: 61  VAFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHV 120

Query: 508 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPIL 687
           GDRG  ARASG++A VI HNPD   +R+KLPSG+KK++PS  R M+G VAGGGR +KP+L
Sbjct: 121 GDRGVFARASGDYAIVIAHNPDNDTSRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPML 180

Query: 688 KA 693
           KA
Sbjct: 181 KA 182


>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
           protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
          Length = 260

 Score =  272 bits (667), Expect = 1e-73
 Identities = 124/183 (67%), Positives = 153/183 (83%), Gaps = 1/183 (0%)
 Frame = +1

Query: 148 MGRVIRAQRKGA-GSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 324
           MGRVIRAQRKGA GSVF SHT  RKG  K RSLDY ER+GY+KG+V +IIHDPGRGAPLA
Sbjct: 1   MGRVIRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLA 60

Query: 325 VVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEK 504
            V FR P+++  +KELF+A EG+YTGQ++YCGKKA L VGNV+P+G++PEG ++CN+E  
Sbjct: 61  RVAFRHPFRYMKQKELFVAAEGMYTGQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELH 120

Query: 505 MGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPI 684
           +GDRG LARASG++A VI HNP++  TRVKLPSG+KK+LPS+ R M+G VAGGGR +KP 
Sbjct: 121 VGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACRAMIGQVAGGGRTEKPF 180

Query: 685 LKA 693
           LKA
Sbjct: 181 LKA 183


>At2g44065.2 68415.m05480 ribosomal protein L2 family protein
           similar to ribosomal protein L2 [Gossypium arboreum]
           GI:17644114; contains Pfam profile  PF03947: Ribosomal
           Proteins L2, C-terminal domain
          Length = 214

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 28/85 (32%), Positives = 45/85 (52%)
 Frame = +1

Query: 439 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 618
           +G+ MP+G M  GTI+ N+E   G   ++ RA+G  A ++   P   +  +KLPSG  K 
Sbjct: 59  IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117

Query: 619 LPSSNRGMVGIVAGGGRIDKPILKA 693
           + +  R  +G V+      K + KA
Sbjct: 118 INAKCRATIGTVSNPSHGTKKLYKA 142


>At2g44065.1 68415.m05479 ribosomal protein L2 family protein
           similar to ribosomal protein L2 [Gossypium arboreum]
           GI:17644114; contains Pfam profile  PF03947: Ribosomal
           Proteins L2, C-terminal domain
          Length = 214

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 28/85 (32%), Positives = 45/85 (52%)
 Frame = +1

Query: 439 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 618
           +G+ MP+G M  GTI+ N+E   G   ++ RA+G  A ++   P   +  +KLPSG  K 
Sbjct: 59  IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117

Query: 619 LPSSNRGMVGIVAGGGRIDKPILKA 693
           + +  R  +G V+      K + KA
Sbjct: 118 INAKCRATIGTVSNPSHGTKKLYKA 142


>At3g27500.1 68416.m03438 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 609

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -3

Query: 498 FKIAHNGTLRHSSNRH-HISNFKSCFLSTINKLACVEPFGSNEELLPCLELVWI 340
           FK   + T+ H S+RH H+S  K    S+  K AC  P GS+  L  C E  +I
Sbjct: 363 FKRNDDNTIDHFSHRHNHMSLDKGGEESSFCK-ACAHPIGSSSSLYKCSECSFI 415


>At4g00450.1 68417.m00062 expressed protein
          Length = 2124

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = -3

Query: 510  THFLFKIAHNGTLRHSSNRHHISNFKSCFLSTINKLACV-EPFGSNEELLPCLELVWIAE 334
            TH+L K+   GT++ S    +   ++      +  + C+ +  G+ +E  P L    ++ 
Sbjct: 1149 THYLKKLIGTGTMKASLAEKNDDGYQVAQQIVVGLMDCIRQTGGAAQEGDPSLVSSAVSA 1208

Query: 333  VYNSQRCTSTRVMDYILNN 277
            + NS   +  R+ D+ L N
Sbjct: 1209 IINSVGLSVARITDFSLGN 1227


>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
           plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
           to plastidic lipoamide dehydrogenase from Arabidopsis
           thaliana [gi:7159282]
          Length = 570

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 549 GEVSRGTCQTTSITHFLFKIAHNGTLRHSSNRHHISNF 436
           G+V  GTC           +A +G +R   N HH+ +F
Sbjct: 117 GDVVGGTCVNRGCVPSKALLAVSGRMRELQNEHHMKSF 154


>At3g12000.1 68416.m01486 S-locus related protein SLR1, putative
           (S1) identical to S-locus related protein SLR1 homolog
           (AtS1) GI:246209 Arabidopsis thaliana]; contains Pfam
           profiles PF01453: Lectin (probable mannose binding),
           PF00954: S-locus glycoprotein family
          Length = 439

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = -3

Query: 690 FQNRFVNTSTSSNNTDHASVA*WQNLLGSRR*LYSCTLSIRIVSNHSGEVSRGTCQTTSI 511
           F+  F  T+TSS N DH  +  W   +  R  ++        V+N    +S+ +  T  I
Sbjct: 56  FELGFFKTTTSSRNGDHWYLGIWYKSISERTYVW--------VANRDNPLSK-SIGTLKI 106

Query: 510 THF-LFKIAHNGTLRHSSN 457
           ++  L  + H+GTL  S+N
Sbjct: 107 SYANLVLLDHSGTLVWSTN 125


>At2g22730.1 68415.m02694 transporter-related low similarity to
           spinster membrane proteins from [Drosophila
           melanogaster] GI:12003974, GI:12003976, GI:12003972,
           GI:12003970; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 510

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 24/79 (30%), Positives = 31/79 (39%)
 Frame = -1

Query: 656 ATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSSRLHTMV 477
           ATIP    LL G TFL     FT   L S    I +    E       +P+    LH + 
Sbjct: 361 ATIPNAFKLLSGATFLGAVFCFTAFTLKSLYGFIALFALGELLVFATQAPVNYVCLHCVK 420

Query: 476 PSGIAPTGITFPTSRVAFF 420
           PS + P  +   T  +  F
Sbjct: 421 PS-LRPLSMAISTVAIHIF 438


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,516,004
Number of Sequences: 28952
Number of extensions: 333419
Number of successful extensions: 898
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)