Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30294
         (749 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          23   3.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   7.1  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   9.3  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   9.3  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   9.3  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   9.3  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   9.3  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   9.3  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   9.3  

>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -1

Query: 734 QRTRSCRSRYP*QDLR 687
           QRT SC SRY  +DLR
Sbjct: 225 QRTSSCHSRY--EDLR 238


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 85  PEHSPHPVRFLGPRL 41
           P H PHP    GP++
Sbjct: 463 PHHHPHPPETPGPQV 477


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -1

Query: 734 QRTRSCRSRY 705
           QRT SC SRY
Sbjct: 225 QRTSSCHSRY 234


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -1

Query: 734 QRTRSCRSRY 705
           QRT SC SRY
Sbjct: 225 QRTSSCHSRY 234


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -1

Query: 734 QRTRSCRSRY 705
           QRT SC SRY
Sbjct: 225 QRTSSCHSRY 234


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -1

Query: 734 QRTRSCRSRY 705
           QRT SC SRY
Sbjct: 225 QRTSSCHSRY 234


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -1

Query: 734 QRTRSCRSRY 705
           QRT SC SRY
Sbjct: 225 QRTSSCHSRY 234


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -1

Query: 734 QRTRSCRSRY 705
           QRT SC SRY
Sbjct: 225 QRTSSCHSRY 234


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -1

Query: 734 QRTRSCRSRY 705
           QRT SC SRY
Sbjct: 225 QRTSSCHSRY 234


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,117
Number of Sequences: 438
Number of extensions: 4636
Number of successful extensions: 20
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)