Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30294
         (749 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21410.1 68415.m02548 vacuolar proton ATPase, putative simila...   163   1e-40
At4g39080.1 68417.m05534 vacuolar proton ATPase, putative simila...   161   6e-40
At2g28520.1 68415.m03465 vacuolar proton ATPase, putative simila...   158   4e-39
At2g28620.1 68415.m03479 kinesin motor protein-related                 31   1.1  
At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon cat...    30   1.9  
At4g36470.1 68417.m05179 S-adenosyl-L-methionine:carboxyl methyl...    29   3.3  
At4g26965.1 68417.m03880 NADH:ubiquinone oxidoreductase family p...    29   4.4  
At5g03420.1 68418.m00295 dentin sialophosphoprotein-related cont...    28   7.6  
At3g08760.1 68416.m01018 protein kinase family protein contains ...    28   7.6  
At1g61140.1 68414.m06888 SNF2 domain-containing protein / helica...    28   7.6  
At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containi...    28   7.6  

>At2g21410.1 68415.m02548 vacuolar proton ATPase, putative similar
           to vacuolar proton ATPase 100-kDa subunit from
           Dictyostelium discoideum P|1384136|gb|AAB49621
          Length = 821

 Score =  163 bits (395), Expect = 1e-40
 Identities = 89/237 (37%), Positives = 143/237 (60%), Gaps = 13/237 (5%)
 Frame = +2

Query: 77  MFRSEEMALCQLFIQPEAAYTSVSELGEAGSVQFRDLNPDVNAFQRKFVNEVRRCDEMER 256
           + RSE M L Q+ +  E+A+ +VS LG+ G VQF+DLN + + FQR +  +++RC EM R
Sbjct: 17  LMRSEPMQLVQVIVPMESAHLTVSYLGDLGLVQFKDLNSEKSPFQRTYAAQIKRCGEMAR 76

Query: 257 KLRYIEAEVHKDGVHIPAVKEAPRAPNPREIIDLEAHLEKTENEILELSHNAVNLKQNYL 436
           K+R+ + ++ K GV     KE     N  ++ D+E  LE+ E E++E++ N   L+++Y 
Sbjct: 77  KIRFFKEQMSKAGV---TPKETLDRENDIDLDDVEVKLEELEAELVEINANNDKLQRSYN 133

Query: 437 ELTELRHVLEKTEAFF-------TAQ------EEIGMDSLTKSLISDETGQQAATRGRLG 577
           EL E + VLEK   FF       TAQ      E++G D L   L+ +E       + +LG
Sbjct: 134 ELVEYKLVLEKAGEFFASAHRSATAQQSEIETEQVGEDLLEAPLLQEEKSVDPTKQVKLG 193

Query: 578 FVAGVVQRERVPAFERMLWRISRGNVFLRRAELDKPLEDPATGNEIYKTVFVAFFQG 748
           F+ G+V RE+   FER+L+R +RGN+F+R++ +++ + DP +G +  K VFV F+ G
Sbjct: 194 FLTGLVPREKSMVFERILFRATRGNIFIRQSVIEESVVDPNSGEKAEKNVFVVFYSG 250


>At4g39080.1 68417.m05534 vacuolar proton ATPase, putative similar
           to Swiss-Prot:Q93050 vacuolar proton translocating
           ATPase 116 kDa subunit A isoform 1 (Clathrin-coated
           vesicle/synaptic vesicle proton pump 116 kDa subunit,
           Vacuolar proton pump subunit 1, Vacuolar adenosine
           triphosphatase subunit Ac116) [Homo sapiens]
          Length = 821

 Score =  161 bits (390), Expect = 6e-40
 Identities = 88/237 (37%), Positives = 141/237 (59%), Gaps = 13/237 (5%)
 Frame = +2

Query: 77  MFRSEEMALCQLFIQPEAAYTSVSELGEAGSVQFRDLNPDVNAFQRKFVNEVRRCDEMER 256
           + RSE M L QL +  E+A+ +VS LG+ G VQF+DLN + + FQR +  +++RC EM R
Sbjct: 16  LMRSETMQLVQLIVPMESAHLTVSYLGDLGLVQFKDLNSEKSPFQRTYAAQIKRCGEMAR 75

Query: 257 KLRYIEAEVHKDGVHIPAVKEAPRAPNPREIIDLEAHLEKTENEILELSHNAVNLKQNYL 436
           K+R+   ++ K GV  PA KE     N  ++ D+E  L + E E++E++ N   L+++Y 
Sbjct: 76  KIRFFRDQMSKAGV--PA-KEMQGKENDIDLDDVEVKLGELEAELVEINANNDKLQRSYN 132

Query: 437 ELTELRHVLEKTEAFF-------------TAQEEIGMDSLTKSLISDETGQQAATRGRLG 577
           EL E + VL+K   FF             T  ++ G D L   L+ +E    +  + +LG
Sbjct: 133 ELMEYKLVLQKAGEFFSSAHRSAADQQRETESQQAGEDLLESPLLQEEKSIDSTKQVKLG 192

Query: 578 FVAGVVQRERVPAFERMLWRISRGNVFLRRAELDKPLEDPATGNEIYKTVFVAFFQG 748
           F+ G+V RE+   FER+L+R +RGN+F+R+  +++P+ DP +G +  K VFV F+ G
Sbjct: 193 FLTGLVPREKSMVFERILFRATRGNIFIRQTVIEEPVIDPNSGEKAEKNVFVVFYSG 249


>At2g28520.1 68415.m03465 vacuolar proton ATPase, putative similar
           to Swiss-Prot:Q93050 vacuolar proton translocating
           ATPase 116 kDa subunit A isoform 1 (Clathrin-coated
           vesicle/synaptic vesicle proton pump 116 kDa subunit,
           Vacuolar proton pump subunit 1, Vacuolar adenosine
           triphosphatase subunit Ac116) [Homo sapiens]
          Length = 817

 Score =  158 bits (383), Expect = 4e-39
 Identities = 91/241 (37%), Positives = 136/241 (56%), Gaps = 17/241 (7%)
 Frame = +2

Query: 77  MFRSEEMALCQLFIQPEAAYTSVSELGEAGSVQFRDLNPDVNAFQRKFVNEVRRCDEMER 256
           + RSE+M L QL I  E+A+ S++ LGE G +QFRDLN D + FQR F N+V+RC EM R
Sbjct: 13  LMRSEKMTLVQLIIPVESAHRSITYLGELGLLQFRDLNADKSPFQRTFANQVKRCGEMSR 72

Query: 257 KLRYIEAEVHKDGVHIPAVKEAPRAPNPREII--DLEAHLEKTENEILELSHNAVNLKQN 430
           KLR+ + ++ K G+       +PR     +I   DLE  L   E+E+LE++ N+  L+Q 
Sbjct: 73  KLRFFKDQIDKAGLRC-----SPRLEIEPDIALGDLERQLADHEHEVLEMNSNSEKLRQT 127

Query: 431 YLELTELRHVLEKTEAFFTAQ------EEIGMDSL---------TKSLISDETGQQAATR 565
           Y EL E + VLEK   F  +       EEI +            T SL+  E     + +
Sbjct: 128 YNELLEFKIVLEKASGFLVSSNTHAIGEEIELHESTYSNNGFIETASLLEQEMNPGHSNQ 187

Query: 566 GRLGFVAGVVQRERVPAFERMLWRISRGNVFLRRAELDKPLEDPATGNEIYKTVFVAFFQ 745
             L F++G++ ++++  FERML+R +RGN+   +   D+ + DP+T   + K VFV FF 
Sbjct: 188 SGLRFISGIINKDKLLKFERMLFRATRGNMLFNQTTSDEEIMDPSTSEMVEKVVFVVFFS 247

Query: 746 G 748
           G
Sbjct: 248 G 248


>At2g28620.1 68415.m03479 kinesin motor protein-related 
          Length = 1076

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
 Frame = +2

Query: 191 PDVNAFQRKFVNEVRRCDEMERKLRYIEAEVHKDGVHIP----AVKEAPRAPNPREIIDL 358
           P+VN    K         E+ER  + + A   K+G++IP      +EA +     +I  +
Sbjct: 396 PEVNQKMMKSAIMKDLYSEIERLKQEVYAAREKNGIYIPKERYTQEEAEKKAMADKIEQM 455

Query: 359 EAHLEKTENEILELSHNAVNLKQNYLELTELRHVLEKTEAFFTAQEEIGMD 511
           E   E  + +I++L     N +Q  L    LR  L+KTE      E+  +D
Sbjct: 456 EVEGEAKDKQIIDL-QELYNSEQ--LVTAGLREKLDKTEKKLYETEQALLD 503


>At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon
           catalytic subunit, putative similar to SP|Q07864 DNA
           polymerase epsilon, catalytic subunit A (EC 2.7.7.7)
           (DNA polymerase II subunit A) {Homo sapiens}; contains
           Pfam profiles: PF03175 DNA polymerase type B, organellar
           and viral, PF00136 DNA polymerase family B, PF03104 DNA
           polymerase family B, exonuclease domain
          Length = 2271

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
 Frame = +2

Query: 341 REIIDLEAHLEKTENEILELSHNAVNLKQNYLEL-TELRHVLEKTEAFFTAQE 496
           +E +DL+ HL   + + L++S + V   Q  +E+  +L H++E+ +A F A E
Sbjct: 122 KEDLDLKNHLSGLQKKYLKISFDTV---QQLMEVKRDLLHIVERNQAKFDALE 171


>At4g36470.1 68417.m05179 S-adenosyl-L-methionine:carboxyl
           methyltransferase family protein similar to SAM:jasmonic
           acid carboxyl methyltransferase (JMT)[GI:13676829] and
           to SAM:salicylic acid carboxyl methyltransferase
           (SAMT)[GI:6002712][Clarkia breweri]
          Length = 371

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 411 ALCDSSRISFSVFSKCASKSMISLG 337
           A C   +  FS+F +C SK M+S G
Sbjct: 197 AYCSQFKEDFSIFLRCRSKEMVSAG 221


>At4g26965.1 68417.m03880 NADH:ubiquinone oxidoreductase family
           protein contains Pfam profile PF05071: NADH:ubiquinone
           oxidoreductase 17.2 kD subunit
          Length = 184

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
 Frame = +2

Query: 215 KFVNEVRRCDEMERKLRYIEAEVHKDGVHIPAV------KEAPRAPNPREIIDLEAHLEK 376
           K+ + +   D   ++ R+++    +D   IP         +  RAP P E+I+LEA  E+
Sbjct: 26  KYFSRMEEIDGFVKEKRWVKFRREEDPTSIPVEWICWLNGQRKRAPTPEEMIELEARRER 85

Query: 377 TE 382
            +
Sbjct: 86  VK 87


>At5g03420.1 68418.m00295 dentin sialophosphoprotein-related
           contains weak similarity to Swiss-Prot:Q9NZW4 dentin
           sialophosphoprotein precursor [Homo sapiens]
          Length = 583

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
 Frame = +2

Query: 287 KDGVHIPAVKEAPRAPNPREI---IDLEAHLE--KTENEILELSHNAVNLKQNYLELTEL 451
           K+ +H   V  + R  + R+    +D + H E  K EN++ E+      L Q  LEL+ L
Sbjct: 406 KEIIHATEVNSSDRNSDQRDGSVGLDTDPHHETRKRENQV-EIDRLRFMLDQKELELSRL 464

Query: 452 RHVLEKTEA 478
           +  +EK +A
Sbjct: 465 KEQIEKEKA 473


>At3g08760.1 68416.m01018 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 557

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 297 STFPPSRKPPVLPTRGKSL 353
           S  PP R+P V PTRG++L
Sbjct: 501 SPSPPPRRPSVSPTRGRTL 519


>At1g61140.1 68414.m06888 SNF2 domain-containing protein / helicase
           domain-containing protein / zinc finger protein-related
           similar to ATPase [Homo sapiens] GI:531196; contains
           Pfam profiles PF00271: Helicase conserved C-terminal
           domain, PF00176: SNF2 family N-terminal domain, PF00097:
           Zinc finger, C3HC4 type (RING finger)
          Length = 1287

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 558 PLAAASGSLRAWSSASACPHSNGCCGVSREATSSCDV 668
           P    S SL+ W S S        CGVS+   +SC +
Sbjct: 96  PAHTCSASLKDWFSLSQGEQPVETCGVSQSEMTSCSI 132


>At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containing
            protein ESTs gb|F20110 and gb|F20109 come from this gene;
            contains Pfam profile PF00515: TPR Domain
          Length = 1558

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 32/131 (24%), Positives = 64/131 (48%), Gaps = 7/131 (5%)
 Frame = +2

Query: 353  DLEAHLEKTENEILELSHNA-VNLKQNYLELTELRHVLEKT--EAFFTAQEEIGMDSLT- 520
            D +AH   ++ +I+  ++ A  ++ ++  E+ +   V++KT  E        + +D  T 
Sbjct: 1085 DDDAHRVASQIDIVTWNNVAEADVTKSRSEVNDPDTVVDKTNIETGDIVVHRLNVDRQTV 1144

Query: 521  KSLISDETGQQAATRGRLGFVAGVVQRERVPAF--ERMLW-RISRGNVFLRRAELDKPLE 691
            +    DE  Q+A ++GR G  AG   R+R P    +RML  +    N  +++  +  PL+
Sbjct: 1145 EESTLDEGWQEAYSKGRSGNGAGRKSRQRQPDLMKKRMLLNKHHNRNQDVQQQNIYSPLQ 1204

Query: 692  DPATGNEIYKT 724
              + G  + K+
Sbjct: 1205 KTSKGPSLSKS 1215


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,411,885
Number of Sequences: 28952
Number of extensions: 395086
Number of successful extensions: 1384
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1379
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)