Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30293
         (758 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13925| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   3e-09
SB_24591| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   9e-07
SB_24775| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.047
SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017)                29   3.1  
SB_46939| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_20803| Best HMM Match : Exo_endo_phos (HMM E-Value=3.2e-06)         29   4.1  
SB_18548| Best HMM Match : Peptidase_A17 (HMM E-Value=1.6e-18)         29   4.1  
SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_38994| Best HMM Match : Integrin_beta (HMM E-Value=0)               28   7.2  
SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_13925| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 317

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 32/89 (35%), Positives = 50/89 (56%)
 Frame = +1

Query: 256 LYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLWHTTNLYRHPKIYEYVEQLAA 435
           ++D  GKRY+D       V+ GHCHP++  AL+DQ  +L  T+  + +  + E+ ++   
Sbjct: 1   MWDVTGKRYIDFLAAYSAVNQGHCHPRIVKALQDQAGILSLTSRAFYNDVLGEF-QEFVT 59

Query: 436 KLPGDLNVVYLVNSGSEANELATLLAKAY 522
           KL G  + V  VNSG E  E A  LA+ +
Sbjct: 60  KLCG-YDKVLPVNSGVEGGETACKLARKW 87


>SB_24591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 51.2 bits (117), Expect = 9e-07
 Identities = 19/55 (34%), Positives = 33/55 (60%)
 Frame = +1

Query: 100 STAKMPPTDFVPRPYTGPSYQQVEQMKGVYMPPSITNAYKKPVLLTQGHMQWLYD 264
           ST +MPP D+ P PY G S+ + +Q++  Y+ P++   YK P+ +     +W+ D
Sbjct: 31  STLEMPPCDYKPEPYKGMSFDKAKQIRQTYLNPALLAYYKDPIFIWAVITKWIQD 85


>SB_24775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 35.5 bits (78), Expect = 0.047
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = +1

Query: 253 WLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQL 363
           ++ D D KRY+D  G    + +GH HP+V  A+++QL
Sbjct: 43  YVTDEDDKRYVDYVGSWGPMILGHSHPEVLDAVRNQL 79


>SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017)
          Length = 1495

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +2

Query: 50  KWLIEEQNYASTSSERTARPKCRRRISCPDRTRDLRTNK 166
           KWL  ++N A  SS  T   K  +  S PD T+    NK
Sbjct: 716 KWLQSQKNQAPNSSSETKDSKWPQAPSIPDNTQTNEPNK 754


>SB_46939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 498 GDFAGESVHRKPRHHIAADQLPRLHQQPHGL 590
           GD +G++ HR  RHH    Q  +L  +PHGL
Sbjct: 143 GD-SGKNDHRTSRHHWRNRQHSKLELRPHGL 172


>SB_20803| Best HMM Match : Exo_endo_phos (HMM E-Value=3.2e-06)
          Length = 563

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 20/73 (27%), Positives = 35/73 (47%)
 Frame = +1

Query: 466 LVNSGSEANELATLLAKAYTGNLDIISLQTSYHGYTSSLMGLTATQSYRMAIPVPPGFYH 645
           LVNS +E   +  L  ++ +GN D ++   S    T S++G++ T    +        Y+
Sbjct: 290 LVNSKTEKGSILHLNTRSLSGNFDKVTNLLSTLNLTFSMIGISETWLKNVCHSCDIPGYN 349

Query: 646 AVHPDPFRXAFGG 684
            VH +P +   GG
Sbjct: 350 YVH-EPRKGRTGG 361


>SB_18548| Best HMM Match : Peptidase_A17 (HMM E-Value=1.6e-18)
          Length = 550

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 472 SLNIPRSNPPGA*RLIVRRTHRFSDVCTGWSYATI 368
           SL+IPR  PPG  R++    H F+D      Y  +
Sbjct: 418 SLHIPRCFPPGFGRMVRTDIHHFADASQDNGYGAV 452


>SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +1

Query: 253 WLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKD 357
           ++ D DG   LD++  I ++ +G+ HP +  A++D
Sbjct: 157 YVVDADGNVMLDVYQQIASIPLGYNHPALLKAMQD 191


>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1711

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +2

Query: 32   QQRNTSKWLIEEQNYASTSSERTARPKCRRRISCPDRTRDLRTNK*NK*KEFTCRLQ 202
            ++      L+EEQ   S S   T R  C    S  +RT D      N+ KE  C+L+
Sbjct: 1355 EEMKNESMLVEEQLNESQSELETTRESCTSMNSDLERTCDELQIAQNELKELRCQLE 1411


>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6753

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = +1

Query: 226  VLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPK 336
            VLLT G  Q L     KR  D    IV+V VG C+ K
Sbjct: 4068 VLLTDGQSQDLVFTAAKRLRDAGVTIVSVGVGCCYSK 4104


>SB_38994| Best HMM Match : Integrin_beta (HMM E-Value=0)
          Length = 467

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = +1

Query: 295 GGIVTVSVGHCHPKVNAALKDQLDVLWHTTNLYRHPKIYEYVEQLAAKLPGDLNVVYLV 471
           GGIVT + G CH   N+ +  + D L + +    H K+ +   Q    + G++  +YLV
Sbjct: 166 GGIVTPNDGQCHLS-NSGVYTKSDELDYPSIAQLHEKLLQKQIQPIFAVTGNVTDLYLV 223


>SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 557

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = +3

Query: 144 HGTFVPTSRTNERSLHAAFNHERL*EAGASHPGAHAVVIRQRRQEIPGSVRWNRHRLRGP 323
           HG + PT  T+   L+A+     +  AG+ HP  HAV     +  +P +  W    LR P
Sbjct: 495 HGMY-PTVPTSSALLNASA--VPVPGAGSPHPHYHAVQGANGQYSVPCNCTWQPQDLRRP 551

Query: 324 LS 329
           ++
Sbjct: 552 VA 553


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,515,657
Number of Sequences: 59808
Number of extensions: 593457
Number of successful extensions: 1611
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1611
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)