Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30292
         (770 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   6.2  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    21   8.2  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    21   8.2  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +3

Query: 243 WRHTASLARDLGSTIKTEKDKFQINLDVQHFSPDEISV 356
           ++H      D+G ++ T K    ++  VQ+F  D I +
Sbjct: 3   FKHRKQRFVDIGDSLLTLKLTHALSSSVQNFPSDAIKI 40


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 137 ARQQTCGSGLRDAANSGRLLNKHDDAV 217
           A  +TCG+GL   A+  + L ++ D +
Sbjct: 49  AELKTCGNGLAFDASDPKFLTENCDYI 75


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 137 ARQQTCGSGLRDAANSGRLLNKHDDAV 217
           A  +TCG+GL   A+  + L ++ D +
Sbjct: 49  AELKTCGNGLAFDASDPKFLTENCDYI 75


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,987
Number of Sequences: 336
Number of extensions: 3462
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20753800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)