Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30292
(770 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 33 0.045
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 30 0.42
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 29 0.56
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|... 28 1.7
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 3.0
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|... 26 5.2
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo... 26 6.9
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 6.9
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 25 9.1
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|... 25 9.1
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 9.1
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 33.1 bits (72), Expect = 0.045
Identities = 23/66 (34%), Positives = 34/66 (51%)
Frame = +3
Query: 456 PEGAETANVVSELSADGILTVTAPRKVIDDKGERVVPITKTGPVRKESAESKNSKEADPG 635
P G V E+ A+G+LTV+A K K E++V G + +E E + KEA+
Sbjct: 495 PRGVPQIEVTFEVDANGVLTVSAVDKSGKGKPEKLVIKNDKGRLSEEDIE-RMVKEAEE- 552
Query: 636 FCEDGK 653
F E+ K
Sbjct: 553 FAEEDK 558
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 29.9 bits (64), Expect = 0.42
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = +3
Query: 399 EKQDEHGYISRQFVRKYSLPEGAETANVVSELSADGILTVTAPRKVIDDKGERVVPITKT 578
E Q YI RQF Y+ E+++++ EL + I T T ++ + +P+T+
Sbjct: 123 EVQSTIEYIMRQF---YAYVSSQESSHIIYELLKNAISTTTLVLSDLNHFRSKKIPLTEF 179
Query: 579 GPVRKESAESK 611
ESA SK
Sbjct: 180 ALRYPESAVSK 190
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 29.5 bits (63), Expect = 0.56
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +3
Query: 273 LGSTIKTEKDKFQINLDVQHFSPDEISVKTAEGYVVVEAKHEEKQDEHGYISRQFVRKY- 449
+G T + E D+F N V +F P+ + + K +E+ DEH Q V +
Sbjct: 1048 IGETSRKELDQFLRNSKVNNFDPNAEAQRHLSYQARYRLKKQERLDEHKEEQEQLVTELL 1107
Query: 450 -SLPEGAETAN 479
LPE N
Sbjct: 1108 GYLPEPPSKPN 1118
>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 571 VIGTTLSPLSSITFLGAVTVKIPSAD 494
++GT L PL+ +T L + VK+P D
Sbjct: 561 ILGTILIPLNLVTGLWGMNVKVPGQD 586
>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 114 EECPCKKQRDNKLVDQDFGMPLTPDD 191
EE KK +D ++VD FG+ L+ DD
Sbjct: 338 EEEERKKGKDGQIVDAGFGLVLSKDD 363
>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 586 TGPVLVIGTTLSPLSSITFLGAVTVKIPSADSSETTLAVSA 464
TGP+ T PL+ IT A P+A ++ T A +A
Sbjct: 135 TGPITYFRTCPDPLTGITPAVAAAAATPAAAATPATPAAAA 175
>SPBC18A7.02c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +3
Query: 426 SRQFVRKYSLPEGAETANVVSELSADGILTVTAPRK 533
S + +R Y +P A+ N++ E+S G + + K
Sbjct: 113 SAKSIRSYIIPTNADPQNIIYEISQSGYYCIWSHSK 148
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.8 bits (54), Expect = 6.9
Identities = 26/76 (34%), Positives = 35/76 (46%)
Frame = -2
Query: 661 ISDFPSSQNPGSASFEFLDSADSLRTGPVLVIGTTLSPLSSITFLGAVTVKIPSADSSET 482
I+ SS + S+S S+ S + I T +SS TF+ VTV PS+ SS T
Sbjct: 210 ITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITT----MSSSTFISTVTV-TPSSSSSST 264
Query: 481 TLAVSAPSGKEYLRTN 434
+ V PS L N
Sbjct: 265 SSEV--PSSTAALALN 278
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 273 LGSTIKTEKDKFQINLDVQHFSPDEISVKTAEGYVVVEA 389
L S+I+ EK + LD++ +SP+E+ + Y + EA
Sbjct: 475 LKSSIEKEKVEIVPFLDIRKYSPNEVLCMSPFWYPIPEA 513
>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 714
Score = 25.4 bits (53), Expect = 9.1
Identities = 34/127 (26%), Positives = 50/127 (39%), Gaps = 8/127 (6%)
Frame = +3
Query: 147 KLVDQDFGMPLTPDDFLTNMMTPWIVHDYFRPWRHTASLARDLGS-TIKTEK-------D 302
K V Q F + + +DF+ + P +VH F +S A GS T+ +K
Sbjct: 200 KAVSQLFEVGVRFNDFIAEGIEPSVVHTLFLKLGLDSSSASSQGSLTLSADKAARSAKLR 259
Query: 303 KFQINLDVQHFSPDEISVKTAEGYVVVEAKHEEKQDEHGYISRQFVRKYSLPEGAETANV 482
K NL H P + T V+ E K+ + + S P G+ T NV
Sbjct: 260 KIDSNLSDTHILPGDNGTPT----VLPERKNLISLP---LLKQDDWLSSSKPFGSSTPNV 312
Query: 483 VSELSAD 503
V E +D
Sbjct: 313 VIEFDSD 319
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 9.1
Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 3/109 (2%)
Frame = -2
Query: 658 SDFPSSQNPGSASFEFLDSADSLRTGPVLVIGTTLSPLSSITFLGAVTVKIPSADSSETT 479
S S Q+ S S E + S I +T S S + + + + S+ SS T
Sbjct: 488 SSASSPQSTLSTSSEVVSEVSSTLLSGSSAIPSTSSSTPSSSIISSPMTSVLSSSSSIPT 547
Query: 478 LAVSAPSGKEYLRTNCLEMYPCSSCFSSC---LASTTT*PSAVFTDISS 341
+ S S ++ + S FSS L+S+T+ PS+ ISS
Sbjct: 548 SSSSDFSSSITTISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISS 596
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,959,625
Number of Sequences: 5004
Number of extensions: 59738
Number of successful extensions: 204
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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