Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30291
         (762 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D55A9A Cluster: PREDICTED: similar to Nuclear va...    33   5.8  

>UniRef50_UPI0000D55A9A Cluster: PREDICTED: similar to Nuclear
           valosin-containing protein-like (Nuclear VCP-like
           protein) (NVLp); n=2; Endopterygota|Rep: PREDICTED:
           similar to Nuclear valosin-containing protein-like
           (Nuclear VCP-like protein) (NVLp) - Tribolium castaneum
          Length = 822

 Score = 33.5 bits (73), Expect = 5.8
 Identities = 27/76 (35%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
 Frame = +1

Query: 241 ENGMNDSSDDEDVPDKSIXXXXXXXXXXXXNVLKINNTLPVVHKT--ENEA-DVSSDDEA 411
           E+  N SS+DED  + S             N L      P V K   ENE  D+SSDD  
Sbjct: 71  EDQDNSSSEDEDDSEDSAPEASTFHNNSLNNQLVNLYNRPQVPKQIDENELIDISSDDSE 130

Query: 412 PPANDKKSANLPDAVQ 459
            PA + K +N P   Q
Sbjct: 131 APAYNDKPSNGPSTSQ 146


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.300    0.123    0.327 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 505,651,901
Number of Sequences: 1657284
Number of extensions: 6879762
Number of successful extensions: 10187
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 9949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10176
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 63381147830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.6 bits)