Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30291
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0672 + 5731288-5731356,5732032-5732117,5732634-5732724,573...    29   5.3  
09_02_0181 - 5425833-5426527,5426667-5429397                           28   7.1  
04_03_0268 - 13663387-13663505,13663935-13664025,13664788-136648...    28   7.1  
07_03_0204 - 15150854-15151147,15152230-15153689,15154055-151542...    28   9.3  
04_01_0213 - 2692253-2694562                                           28   9.3  

>12_01_0672 + 5731288-5731356,5732032-5732117,5732634-5732724,
            5732886-5732935,5733339-5733408,5733508-5733617,
            5733943-5734463,5734856-5734949,5735095-5735225,
            5735241-5736274,5736383-5736457,5736615-5737104,
            5737375-5738009,5738166-5738378
          Length = 1222

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 22/80 (27%), Positives = 33/80 (41%)
 Frame = +1

Query: 214  IPAQATLLNENGMNDSSDDEDVPDKSIXXXXXXXXXXXXNVLKINNTLPVVHKTENEADV 393
            +PA + L N +   +SS  E   D  I            N  ++NN LP  +K   +   
Sbjct: 1068 VPA-SDLCNHSCQANSSPTEGKKDSKIPILDSTEDRSCSNNAELNNRLPNRNKLSTDPAQ 1126

Query: 394  SSDDEAPPANDKKSANLPDA 453
            S DD    A D  + + PD+
Sbjct: 1127 SGDDSKKSARDPDN-HKPDS 1145


>09_02_0181 - 5425833-5426527,5426667-5429397
          Length = 1141

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 706 LKMHLMTVLYRFDL*SFEVFHWSLHLHWI 620
           L  H +TVLY  D    E   W+LHL ++
Sbjct: 779 LLFHRLTVLYTIDCDQLEDISWALHLPFL 807


>04_03_0268 -
           13663387-13663505,13663935-13664025,13664788-13664874,
           13665849-13665904,13666788-13666841,13667413-13667523,
           13668293-13668419
          Length = 214

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = +1

Query: 229 TLLNENGMNDSSDDEDVPDKSIXXXXXXXXXXXXNVLKINNTLPVVHKTENEADVSSDDE 408
           ++LN +  +D  +  + P  S             + +++N+T+ V H  EN A  SSD +
Sbjct: 9   SVLNLDAEDDREEGAEPPTSSKAEAAAVTSSTEIDKIRLNHTMIVNHDGENLASSSSDYD 68

Query: 409 AP 414
            P
Sbjct: 69  KP 70


>07_03_0204 -
           15150854-15151147,15152230-15153689,15154055-15154266,
           15155123-15155275,15155569-15155630,15155733-15155785,
           15156380-15156452,15156499-15156619,15156699-15156878,
           15157333-15157391
          Length = 888

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 379 NEADVSSDDEAPPANDKKSANLPDAV 456
           N+AD+ S ++APP+  K + N  D +
Sbjct: 504 NDADMFSGEKAPPSRKKNNVNTADPI 529


>04_01_0213 - 2692253-2694562
          Length = 769

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/61 (21%), Positives = 31/61 (50%)
 Frame = +2

Query: 521 VMNLQITKEKKHLNKHLKVRKINKTLQMAKILKNPVKMKTPVKNLKRL*IKTVKHSHQMH 700
           +M +    E+    +  K+ K+  + Q     K P+K+   ++NL+R+  + + ++ Q+ 
Sbjct: 152 IMGIVKYGERAFALRRAKLEKMRSSSQKEAEQKKPIKLSNSIRNLRRIGRRKMDNNEQIL 211

Query: 701 L 703
           L
Sbjct: 212 L 212


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.300    0.123    0.327 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,708,441
Number of Sequences: 37544
Number of extensions: 181886
Number of successful extensions: 202
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.6 bits)