BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30291 (762 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 12_01_0672 + 5731288-5731356,5732032-5732117,5732634-5732724,573... 29 5.3 09_02_0181 - 5425833-5426527,5426667-5429397 28 7.1 04_03_0268 - 13663387-13663505,13663935-13664025,13664788-136648... 28 7.1 07_03_0204 - 15150854-15151147,15152230-15153689,15154055-151542... 28 9.3 04_01_0213 - 2692253-2694562 28 9.3 >12_01_0672 + 5731288-5731356,5732032-5732117,5732634-5732724, 5732886-5732935,5733339-5733408,5733508-5733617, 5733943-5734463,5734856-5734949,5735095-5735225, 5735241-5736274,5736383-5736457,5736615-5737104, 5737375-5738009,5738166-5738378 Length = 1222 Score = 28.7 bits (61), Expect = 5.3 Identities = 22/80 (27%), Positives = 33/80 (41%) Frame = +1 Query: 214 IPAQATLLNENGMNDSSDDEDVPDKSIXXXXXXXXXXXXNVLKINNTLPVVHKTENEADV 393 +PA + L N + +SS E D I N ++NN LP +K + Sbjct: 1068 VPA-SDLCNHSCQANSSPTEGKKDSKIPILDSTEDRSCSNNAELNNRLPNRNKLSTDPAQ 1126 Query: 394 SSDDEAPPANDKKSANLPDA 453 S DD A D + + PD+ Sbjct: 1127 SGDDSKKSARDPDN-HKPDS 1145 >09_02_0181 - 5425833-5426527,5426667-5429397 Length = 1141 Score = 28.3 bits (60), Expect = 7.1 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = -3 Query: 706 LKMHLMTVLYRFDL*SFEVFHWSLHLHWI 620 L H +TVLY D E W+LHL ++ Sbjct: 779 LLFHRLTVLYTIDCDQLEDISWALHLPFL 807 >04_03_0268 - 13663387-13663505,13663935-13664025,13664788-13664874, 13665849-13665904,13666788-13666841,13667413-13667523, 13668293-13668419 Length = 214 Score = 28.3 bits (60), Expect = 7.1 Identities = 16/62 (25%), Positives = 29/62 (46%) Frame = +1 Query: 229 TLLNENGMNDSSDDEDVPDKSIXXXXXXXXXXXXNVLKINNTLPVVHKTENEADVSSDDE 408 ++LN + +D + + P S + +++N+T+ V H EN A SSD + Sbjct: 9 SVLNLDAEDDREEGAEPPTSSKAEAAAVTSSTEIDKIRLNHTMIVNHDGENLASSSSDYD 68 Query: 409 AP 414 P Sbjct: 69 KP 70 >07_03_0204 - 15150854-15151147,15152230-15153689,15154055-15154266, 15155123-15155275,15155569-15155630,15155733-15155785, 15156380-15156452,15156499-15156619,15156699-15156878, 15157333-15157391 Length = 888 Score = 27.9 bits (59), Expect = 9.3 Identities = 10/26 (38%), Positives = 17/26 (65%) Frame = +1 Query: 379 NEADVSSDDEAPPANDKKSANLPDAV 456 N+AD+ S ++APP+ K + N D + Sbjct: 504 NDADMFSGEKAPPSRKKNNVNTADPI 529 >04_01_0213 - 2692253-2694562 Length = 769 Score = 27.9 bits (59), Expect = 9.3 Identities = 13/61 (21%), Positives = 31/61 (50%) Frame = +2 Query: 521 VMNLQITKEKKHLNKHLKVRKINKTLQMAKILKNPVKMKTPVKNLKRL*IKTVKHSHQMH 700 +M + E+ + K+ K+ + Q K P+K+ ++NL+R+ + + ++ Q+ Sbjct: 152 IMGIVKYGERAFALRRAKLEKMRSSSQKEAEQKKPIKLSNSIRNLRRIGRRKMDNNEQIL 211 Query: 701 L 703 L Sbjct: 212 L 212 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.300 0.123 0.327 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,708,441 Number of Sequences: 37544 Number of extensions: 181886 Number of successful extensions: 202 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 200 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 202 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 2039640244 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 17 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 43 (21.6 bits)
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