Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30291
         (762 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8599| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_10459| Best HMM Match : DUF591 (HMM E-Value=1.2)                    29   4.1  
SB_12927| Best HMM Match : ATP-synt_A (HMM E-Value=4.3)                28   7.2  

>SB_8599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 767

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +1

Query: 238 NENGMNDSSDDEDVPDKSIXXXXXXXXXXXXNVLKINNTLPVVHKTEN--EADVSSDDEA 411
           ++  ++ +SDDE+ P ++             N  + N  + V+ + E+  E+D + D E+
Sbjct: 240 DDGDLDITSDDEEKPSEN----HDEKVHIQENETENNEKISVIDEAEDKKESDSTRDRES 295

Query: 412 PPANDKKSANL 444
           PP  D K  N+
Sbjct: 296 PPREDAKRPNI 306


>SB_10459| Best HMM Match : DUF591 (HMM E-Value=1.2)
          Length = 224

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +2

Query: 629 KMKTPVKNLKRL*IKTVKHSHQMHLQRLVMKNHRKRMVKSN 751
           K  T +  L+R  IK    +HQ HLQ++ +  HR R+ +S+
Sbjct: 165 KRLTEIDELER--IKGASKAHQSHLQKVRLYRHRYRVGRSD 203


>SB_12927| Best HMM Match : ATP-synt_A (HMM E-Value=4.3)
          Length = 477

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/26 (38%), Positives = 20/26 (76%)
 Frame = -2

Query: 173 ESVSFLMSFSILIPPASITFFSASGV 96
           ESV  +++F+ L+PP   +FF+++G+
Sbjct: 370 ESVLEMITFNDLVPPLHFSFFASTGI 395


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.300    0.123    0.327 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,289,840
Number of Sequences: 59808
Number of extensions: 237677
Number of successful extensions: 371
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.6 bits)