Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30290
(765 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10) 192 3e-49
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.) 72 6e-13
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.027
SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_13289| Best HMM Match : DUF543 (HMM E-Value=10) 28 9.5
>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
Length = 229
Score = 192 bits (468), Expect = 3e-49
Identities = 105/219 (47%), Positives = 131/219 (59%), Gaps = 4/219 (1%)
Frame = -2
Query: 671 IDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL*RLGFVFLFTVGGLTGV 492
+++DTRAYFT+AT+IIAVPTGIK+F LAT++G I + +L +GFVFLFT+GGLTGV
Sbjct: 1 MNVDTRAYFTAATMIIAVPTGIKVFSWLATLYGGAIRLDTPMLWAIGFVFLFTIGGLTGV 60
Query: 491 ILANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXXXXIN*YPLFTGLSLNSYILKIQFFT 312
ILANSS+D+ +HDTYYVVAHFHYVLS + TG N KI F+
Sbjct: 61 ILANSSLDVVMHDTYYVVAHFHYVLSMGAVFAIFAGFYFWFGKITGYCYNELYGKIHFWI 120
Query: 311 IFIGVNITFFPQHFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 132
+FIGVNITFFPQHFLGLAG PRRYSD+ D
Sbjct: 121 MFIGVNITFFPQHFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAY 180
Query: 131 INQ-RINLFSLNLPS---SIE*YQNLPPAEHSYNELPIL 27
+ + + + N S S+E Q PPA H+YNELP +
Sbjct: 181 VREVKFIGWVENTGSSWPSLEWVQQSPPALHTYNELPFV 219
>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 71.7 bits (168), Expect = 6e-13
Identities = 45/115 (39%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Frame = -2
Query: 359 TGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXX 180
TG N KI F+ +FIGVNITFFPQHFLGLAG PRRYSD+ D
Sbjct: 19 TGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFADGYAGWNLVCSFGSTI 78
Query: 179 XXXXXXXXXXXXXXXXINQ-RINLFSLNLPS---SIE*YQNLPPAEHSYNELPIL 27
+ + + + N S S+E Q PPA H+YNELP +
Sbjct: 79 SVVGVVWFIFVVYDAYVREVKFIGWVENTGSSWPSLEWVQQSPPALHTYNELPFV 133
>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 38.3 bits (85), Expect = 0.007
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Frame = -2
Query: 275 HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLN 99
HFLGLAG PRRYSD+ D + + + + N
Sbjct: 1 HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60
Query: 98 LPS---SIE*YQNLPPAEHSYNELPIL 27
S S+E Q PPA H+YNELP +
Sbjct: 61 TGSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 38.3 bits (85), Expect = 0.007
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Frame = -2
Query: 275 HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLN 99
HFLGLAG PRRYSD+ D + + + + N
Sbjct: 1 HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60
Query: 98 LPS---SIE*YQNLPPAEHSYNELPIL 27
S S+E Q PPA H+YNELP +
Sbjct: 61 TGSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 38.3 bits (85), Expect = 0.007
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Frame = -2
Query: 275 HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLN 99
HFLGLAG PRRYSD+ D + + + + N
Sbjct: 1 HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60
Query: 98 LPS---SIE*YQNLPPAEHSYNELPIL 27
S S+E Q PPA H+YNELP +
Sbjct: 61 TGSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 38.3 bits (85), Expect = 0.007
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Frame = -2
Query: 275 HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLN 99
HFLGLAG PRRYSD+ D + + + + N
Sbjct: 1 HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60
Query: 98 LPS---SIE*YQNLPPAEHSYNELPIL 27
S S+E Q PPA H+YNELP +
Sbjct: 61 TGSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 38.3 bits (85), Expect = 0.007
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Frame = -2
Query: 275 HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLN 99
HFLGLAG PRRYSD+ D + + + + N
Sbjct: 1 HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60
Query: 98 LPS---SIE*YQNLPPAEHSYNELPIL 27
S S+E Q PPA H+YNELP +
Sbjct: 61 TGSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 36.3 bits (80), Expect = 0.027
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = -2
Query: 275 HFLGLAGIPRRYSDYPD 225
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
>SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -2
Query: 692 HHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL 543
HH+ T+ I + T+I PT I + + +H T IN +P ++
Sbjct: 14 HHLHTIIIHLHPTVIHLHPTVIFLHPTVIHLHPTVLNLHPTIINLHPTVI 63
>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -1
Query: 372 ISFIYRPFIKFLYTKNSIFYNIYWSK--YNIFSTTFFRFSWNT 250
+ FIY + FL +KN F+ YW+ YN F W T
Sbjct: 14 VGFIYVAKVVFLLSKNKSFFFEYWTPVVYNAFGQRSPNSRWRT 56
>SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)
Length = 319
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 100 ISHHQLNDIKIYHQQNIHIMNYQF 29
I+HHQ + I I H Q+ I+NY +
Sbjct: 296 INHHQSSSIIINHHQSSSIINYYY 319
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,172,886
Number of Sequences: 59808
Number of extensions: 207516
Number of successful extensions: 371
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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