Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30289
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...   376   e-105
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    75   1e-14
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    53   5e-08
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    31   0.13 
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    28   1.2  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.6  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.6  
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    26   4.8  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    26   6.3  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   8.4  

>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score =  376 bits (924), Expect = e-105
 Identities = 179/209 (85%), Positives = 196/209 (93%)
 Frame = +2

Query: 17  YSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 196
           +SGCAMGE+FRDNGKH L++YDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE
Sbjct: 276 FSGCAMGEWFRDNGKHGLVVYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 335

Query: 197 RAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINV 376
           RAAKMS K GGGSLTALPVIETQ GDVSAYIPTNVISITDGQIFLE+ELF+KGIRPAINV
Sbjct: 336 RAAKMSPKHGGGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLESELFFKGIRPAINV 395

Query: 377 GLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDAATQQLLNRGMRLTEL 556
           GLSVSRVGSAAQ KAMKQVAG +KL LAQYREVA+FAQFGSDLDA T+  L+RG+RLTEL
Sbjct: 396 GLSVSRVGSAAQVKAMKQVAGQIKLFLAQYREVASFAQFGSDLDAGTRATLDRGLRLTEL 455

Query: 557 LKQGQYVPMAIEEQVAIIYCGVRGHLDKL 643
           LKQ QY P+A+EEQV +IYCGV+G+LDK+
Sbjct: 456 LKQPQYSPLAVEEQVPLIYCGVKGYLDKI 484


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 74.5 bits (175), Expect = 1e-14
 Identities = 43/122 (35%), Positives = 67/122 (54%)
 Frame = +2

Query: 59  KHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDKMGGGSL 238
           KH L I  D++  A A R++S      PGR  YPG ++   S + ERA ++  +   GS+
Sbjct: 269 KHVLTILTDMTSYADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVEGR--NGSI 326

Query: 239 TALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTK 418
           T +P++     D++  IP     IT+GQIF++ +L    I P INV  S+SR+  +A  +
Sbjct: 327 TQIPILTMPNDDITHPIPDLTGYITEGQIFVDRQLHNNAIYPPINVLPSLSRLMKSAIGE 386

Query: 419 AM 424
            M
Sbjct: 387 GM 388


>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 52.8 bits (121), Expect = 5e-08
 Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 3/144 (2%)
 Frame = +2

Query: 17  YSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 196
           Y+G  + E++RD GK+  ++ D  S+ A A R++S  L   P    YP  +    +   E
Sbjct: 336 YTGITLAEYYRDQGKNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGAKLASFYE 395

Query: 197 RAAK---MSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPA 367
           RA +   +      G+++ +  +    GD S  + +  + I      L+ +L  +   P+
Sbjct: 396 RAGRARCLGSPDREGTVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPS 455

Query: 368 INVGLSVSRVGSAAQTKAMKQVAG 439
           IN  LS S+  +A Q    ++V G
Sbjct: 456 INTSLSYSKYINALQPWYEERVPG 479


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 95  QAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKM 211
           Q++A  +  +LL+ P GRE   GD FY +   +   A++
Sbjct: 651 QSLACAKYKILLKDPKGREVNAGDKFYFNENFVSNLARI 689


>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
 Frame = +2

Query: 362 PAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDAATQQLLNRG- 538
           P  N+GL    V     T+  +   G +  E   Y  +  FA+  +D+D   +QL+  G 
Sbjct: 337 PHTNIGLMSKLV-----TQIEEPFGGELTFENPFYTTLQCFAENSADMDDNLRQLIKSGD 391

Query: 539 -MRLTELLKQGQYVPMAIEEQVAI 607
             ++T+L  + +      E  +A+
Sbjct: 392 TEKMTDLFSKSRLYRYFFETSIAV 415


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1038

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 628  SPRQAGPPPKSLPSRRNSLNTSKLATRVFSP 720
            +P++A PPP+S P       T+KLA R+  P
Sbjct: 942  APKEAPPPPRSEPVS----TTTKLAKRITQP 968


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 86  LSKQAVAYRQMSLLLRRPP 142
           LSK+A+ YR+  L L+RPP
Sbjct: 102 LSKRALHYRRKRLALKRPP 120


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 468 VRSQLLPSSVLTWMPLHSSCSTEECVLLSSSSKDN 572
           +R    P   L W PLH +  +    LL+S SKDN
Sbjct: 216 LRRHTKPIMALCWQPLHLAPDSGP-YLLASGSKDN 249


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -2

Query: 622 DTAVNDGDLFLNSHGHILSLLEELSKTHSSVEQLLCSGIQVRTEL 488
           D  ++ G+   + +  I+SLL+ELS   S  E    S +Q+ +E+
Sbjct: 65  DAKLSMGEKMDDLNSSIVSLLQELSTLQSVAENTQSSIVQMTSEI 109


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 35  GEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPG 163
           GE +   G H  ++ DDLS+   AYRQ    L+ P   + + G
Sbjct: 402 GEIWSALG-HCYLMQDDLSRAYSAYRQALYHLKDPKDPKLWYG 443


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,098,209
Number of Sequences: 5004
Number of extensions: 63021
Number of successful extensions: 194
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)