Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30289
(728 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 76 3e-14
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 75 4e-14
06_03_1014 - 26902971-26903085,26903182-26903270,26904302-269043... 51 8e-07
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 49 3e-06
08_02_0603 + 19208177-19210033,19210581-19210618,19210937-192110... 29 2.9
09_04_0131 + 14917239-14918510,14918803-14918895 29 3.8
03_05_0116 + 20978298-20978621,20979272-20979364 29 5.0
12_02_0249 + 16427590-16428975,16428990-16429082 28 6.6
03_06_0128 - 31879286-31879381,31879463-31879574,31879680-318797... 28 6.6
01_06_1261 - 35826513-35828941,35829201-35829294 28 6.6
11_06_0340 - 22500411-22500566,22500660-22500783,22500914-225010... 28 8.7
06_03_0444 + 20864183-20864436,20864831-20865818 28 8.7
06_01_0754 - 5644310-5646292 28 8.7
05_06_0097 + 25548272-25548664 28 8.7
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 75.8 bits (178), Expect = 3e-14
Identities = 42/123 (34%), Positives = 69/123 (56%)
Frame = +2
Query: 56 GKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDKMGGGS 235
GKH L+I D+S A A R++S PGR YPG ++ + + ERA ++ + GS
Sbjct: 307 GKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGR--SGS 364
Query: 236 LTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQT 415
+T +P++ D++ P IT+GQI+++ +L + I P INV S+SR+ +A
Sbjct: 365 ITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIG 424
Query: 416 KAM 424
+ M
Sbjct: 425 EGM 427
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 75.4 bits (177), Expect = 4e-14
Identities = 42/123 (34%), Positives = 69/123 (56%)
Frame = +2
Query: 56 GKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDKMGGGS 235
GKH L+I D+S A A R++S PGR YPG ++ + + ERA ++ + GS
Sbjct: 277 GKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRK--GS 334
Query: 236 LTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQT 415
+T +P++ D++ P IT+GQI+++ +L + I P INV S+SR+ +A
Sbjct: 335 ITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIG 394
Query: 416 KAM 424
+ M
Sbjct: 395 EGM 397
>06_03_1014 -
26902971-26903085,26903182-26903270,26904302-26904380,
26904488-26904585,26904848-26904952,26905031-26905117,
26905218-26905412,26905890-26905996,26906559-26906754,
26906865-26906966,26907100-26907171,26907404-26907505,
26907638-26907675,26907769-26907880,26907972-26908028,
26908122-26908177,26908283-26908409,26908856-26908910,
26908919-26909049
Length = 640
Score = 51.2 bits (117), Expect = 8e-07
Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 3/136 (2%)
Frame = +2
Query: 17 YSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 196
Y+G + E+FRD G + ++ D S+ A A R++S L P YP + + E
Sbjct: 348 YTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYE 407
Query: 197 RAAK---MSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPA 367
RA K + GS+T + + GD S + + +SI L+ +L + P+
Sbjct: 408 RAGKVKCLGSPDRTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPS 467
Query: 368 INVGLSVSRVGSAAQT 415
+N +S S+ A ++
Sbjct: 468 VNWLISYSKYSKALES 483
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 49.2 bits (112), Expect = 3e-06
Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 3/129 (2%)
Frame = +2
Query: 17 YSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 196
Y+G + E++RD G + ++ D S+ A A R++S L P YP + + E
Sbjct: 334 YTGITIAEYYRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYE 393
Query: 197 RAAK---MSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPA 367
RA K + GS+T + + GD S + + +SI L+ +L + P+
Sbjct: 394 RAGKVRCLGSPKRDGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPS 453
Query: 368 INVGLSVSR 394
+N +S S+
Sbjct: 454 VNWLISYSK 462
>08_02_0603 +
19208177-19210033,19210581-19210618,19210937-19211059,
19211471-19211852
Length = 799
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +2
Query: 518 QQLLNRGMRLTELLKQGQYVPMAIEEQVAIIYCGVRGHLDKLDPLQNHCLREGIHST 688
Q ++ + L + +P A+ I C RG++DK LQ + GI ST
Sbjct: 563 QSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKST 619
>09_04_0131 + 14917239-14918510,14918803-14918895
Length = 454
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 17 YSGCAMGEFFRDNGKHALIIYDDLSK 94
Y+ F RDN KHAL+ Y DL K
Sbjct: 78 YNALMSSHFKRDNIKHALVFYYDLLK 103
>03_05_0116 + 20978298-20978621,20979272-20979364
Length = 138
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 575 VPMAIEEQVAIIYCGVRGHLDKLDPLQNHCLREG 676
+P + + + I++ GH LDP ++HC REG
Sbjct: 10 LPPPLPDVIIIVH---HGHQHSLDPCRHHCHREG 40
>12_02_0249 + 16427590-16428975,16428990-16429082
Length = 492
Score = 28.3 bits (60), Expect = 6.6
Identities = 26/114 (22%), Positives = 48/114 (42%)
Frame = +2
Query: 110 RQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDKMGGGSLTALPVIETQAGDVSAYI 289
R+MS + PP + + P Y ++ + + D GG+ A ++ ++ A
Sbjct: 269 RRMSRVSFDPPYQHSPPPSYTYF-VLAVDVSIRRRDGETGGTTAAATIMPLPTTELRAPS 327
Query: 290 PTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQVAGSMKL 451
T ++T GQ+ L + G R + ++ L V R + + MK M L
Sbjct: 328 CTGEATVTPGQLLLAPSSWRGGDRRSSSLALLVGR-STQVEIWTMKLTCHGMAL 380
>03_06_0128 -
31879286-31879381,31879463-31879574,31879680-31879747,
31880959-31881072,31881207-31881247,31881340-31881393,
31881785-31881866,31882063-31882116
Length = 206
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 346 LQRYPTSHQRRSVCIACRIC 405
L+RYPT +R CIAC++C
Sbjct: 97 LRRYPTGEER---CIACKLC 113
>01_06_1261 - 35826513-35828941,35829201-35829294
Length = 840
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = -2
Query: 646 VQLVEVTADTAVNDGDLFLNSHGHILSLLEELSKTHSSVEQLLCSGIQVRTELGKS 479
++L+++ ADT DL+ S +++ +EE T+ S + L +V EL KS
Sbjct: 41 IKLIDIEADTFARKADLYFKSRPDLINHVEE---TYRSYQALADRYDRVSGELHKS 93
>11_06_0340 -
22500411-22500566,22500660-22500783,22500914-22501080,
22501157-22501336,22501544-22502427,22502728-22502843,
22503745-22504217
Length = 699
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 346 LQRYPTSHQRRSVCIACRICCSDQGYEAGGRF 441
L+ Y TS+ +S+ + CR C GY A RF
Sbjct: 438 LKAYITSYTAKSISV-CRESCGGHGYAAVNRF 468
>06_03_0444 + 20864183-20864436,20864831-20865818
Length = 413
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 706 WWLVLMC*VNSFSKAVILEGVQLVEVTAD 620
WWL ++ V SFS A I G+ L + D
Sbjct: 130 WWLSIIAAVMSFSYAAIAVGLSLAQTIMD 158
>06_01_0754 - 5644310-5646292
Length = 660
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 610 LLRCPRSPRQAGPPPKSL 663
L R P+ PRQ+ PPPK L
Sbjct: 238 LRRLPKVPRQSSPPPKLL 255
>05_06_0097 + 25548272-25548664
Length = 130
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 203 RHAQADGSEDRTRHQDKPHGRGDDA 129
+H + D R RHQ++ HG DDA
Sbjct: 16 QHLRRDDDARRRRHQEQQHGGVDDA 40
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,465,034
Number of Sequences: 37544
Number of extensions: 505304
Number of successful extensions: 1767
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1765
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -