BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30289 (728 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_49893| Best HMM Match : ATP-synt_ab (HMM E-Value=0) 295 3e-80 SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.) 279 1e-75 SB_42081| Best HMM Match : ATP-synt_ab (HMM E-Value=8.3e-07) 175 3e-44 SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 2e-13 SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0) 54 2e-07 SB_12803| Best HMM Match : Lig_chan (HMM E-Value=0) 33 0.24 SB_8607| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.31 SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9 SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) 29 3.9 SB_21412| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7 SB_9194| Best HMM Match : SWIM (HMM E-Value=0.01) 28 6.7 SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9 SB_41873| Best HMM Match : Homeobox (HMM E-Value=2.3e-29) 28 8.9 >SB_49893| Best HMM Match : ATP-synt_ab (HMM E-Value=0) Length = 313 Score = 295 bits (723), Expect = 3e-80 Identities = 144/217 (66%), Positives = 175/217 (80%), Gaps = 11/217 (5%) Frame = +2 Query: 17 YSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 196 Y+GC MGE+FRD G+ ALI+YDDLSKQAVAYRQ+SLLLRRPPGREAYPGDVFYLHSRLLE Sbjct: 40 YAGCTMGEYFRDRGEDALIVYDDLSKQAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLE 99 Query: 197 RAAKMSDKM------GG-----GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETEL 343 RA+++S++ G GSLTALP+IETQAGDVSA++PTNVISITDGQIFLE+ + Sbjct: 100 RASRVSEEYVEKFTNGAVTGKTGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLESAM 159 Query: 344 FYKGIRPAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDAATQQ 523 F GIRPA+N G+SVSRVG AAQTK +K+++G ++ LAQYRE+AAFAQF SDLD AT++ Sbjct: 160 FNSGIRPAVNAGISVSRVGGAAQTKIIKKLSGGIRTALAQYRELAAFAQFASDLDEATRK 219 Query: 524 LLNRGMRLTELLKQGQYVPMAIEEQVAIIYCGVRGHL 634 L G R+TEL+KQ QY PM+I + +Y RG L Sbjct: 220 QLEHGQRVTELMKQKQYAPMSIADMSVSLYAAERGFL 256 >SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 390 Score = 279 bits (685), Expect = 1e-75 Identities = 135/140 (96%), Positives = 137/140 (97%) Frame = +2 Query: 17 YSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 196 YSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE Sbjct: 197 YSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 256 Query: 197 RAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINV 376 RAAKM+D GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINV Sbjct: 257 RAAKMNDSNGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINV 316 Query: 377 GLSVSRVGSAAQTKAMKQVA 436 GLSVSRVGSAAQTKAMKQ + Sbjct: 317 GLSVSRVGSAAQTKAMKQTS 336 >SB_42081| Best HMM Match : ATP-synt_ab (HMM E-Value=8.3e-07) Length = 99 Score = 175 bits (426), Expect = 3e-44 Identities = 84/97 (86%), Positives = 91/97 (93%) Frame = +2 Query: 146 REAYPGDVFYLHSRLLERAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQI 325 REAYPGDVFYLHSRLLERAAK+SD +G GSLTALP+IETQAGDVSAYIPTNVISITDGQI Sbjct: 2 REAYPGDVFYLHSRLLERAAKLSDALGAGSLTALPIIETQAGDVSAYIPTNVISITDGQI 61 Query: 326 FLETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQVA 436 FL++ELFY GIRPAINVGLSVSRVGSAAQ MK++A Sbjct: 62 FLDSELFYNGIRPAINVGLSVSRVGSAAQVAMMKKLA 98 >SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 428 Score = 73.3 bits (172), Expect = 2e-13 Identities = 41/122 (33%), Positives = 69/122 (56%) Frame = +2 Query: 59 KHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDKMGGGSL 238 KH L+I D+S A A R++S PGR +PG ++ + + ERA ++ + GS+ Sbjct: 209 KHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATVYERAGRVEGR--NGSI 266 Query: 239 TALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTK 418 T +P++ D++ IP IT+GQI+++ +L + I P INV S+SR+ +A + Sbjct: 267 TQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGE 326 Query: 419 AM 424 M Sbjct: 327 GM 328 >SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0) Length = 475 Score = 53.6 bits (123), Expect = 2e-07 Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 6/132 (4%) Frame = +2 Query: 17 YSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL-- 190 Y+G + E+FRD G H ++ D S+ A A R++S L P YP YL +RL Sbjct: 186 YTGITLSEYFRDMGHHVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGARLAS 242 Query: 191 -LERAAKMS---DKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGI 358 ERA ++S + GS+T + + GD S + + ++I L+ +L + Sbjct: 243 FYERAGRVSCLGNPQREGSVTIVGAVSPPGGDFSDPVTSATLNIVQVFWGLDKKLAQRKH 302 Query: 359 RPAINVGLSVSR 394 P+IN +S S+ Sbjct: 303 FPSINWLISYSK 314 >SB_12803| Best HMM Match : Lig_chan (HMM E-Value=0) Length = 1001 Score = 33.1 bits (72), Expect = 0.24 Identities = 21/59 (35%), Positives = 26/59 (44%) Frame = -2 Query: 202 GTLKQTGVKIEHVTRISLTAGGTTQQ*RHLTVGYGLFGQIVVDNKGVFAIITEKFTHGT 26 G TG + +T S T G T Q L YGLFG+ DN I+T HG+ Sbjct: 221 GRAHYTGFDFQELTNWSSTKGLTDQGKHQLLYKYGLFGRSYYDNSTRLRIVT--IEHGS 277 >SB_8607| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 564 Score = 32.7 bits (71), Expect = 0.31 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Frame = +1 Query: 595 TGRHHLLRCPRSPRQAGPPPKSLP-SRRNSLNTSKLAT 705 TGRHH+ RSPR PP + P +R T KL T Sbjct: 427 TGRHHVASDDRSPRNDSPPTRQPPEQQRVDSKTRKLFT 464 >SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 783 Score = 29.5 bits (63), Expect = 2.9 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +2 Query: 44 FRDNGKHALIIYDDLSKQAVAYRQM 118 +R G HA I+YD L +VA R+M Sbjct: 349 YRKGGDHAYILYDSLDAASVAAREM 373 >SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) Length = 5087 Score = 29.1 bits (62), Expect = 3.9 Identities = 17/48 (35%), Positives = 26/48 (54%) Frame = +2 Query: 374 VGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDAAT 517 +G+S R + + K+V S + E+A+ EV AFA S+ D AT Sbjct: 1770 LGISEEREQETEELEEHKEVVESEETEMAEEEEVPAFADIPSE-DTAT 1816 >SB_21412| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1015 Score = 28.3 bits (60), Expect = 6.7 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = -1 Query: 506 PSQNRTGQKLRPHGTEPIPASWNRPPAS 423 P+Q R+GQ R G P+PAS +RP S Sbjct: 953 PAQ-RSGQGKRDQGNAPVPASRSRPVPS 979 >SB_9194| Best HMM Match : SWIM (HMM E-Value=0.01) Length = 701 Score = 28.3 bits (60), Expect = 6.7 Identities = 21/73 (28%), Positives = 33/73 (45%) Frame = -3 Query: 543 RIPLLSSCCVAASKSEPNWAKAATSRY*ANSSFMEPATCFIALV*AADPTRDTDRPTLMA 364 R+P C V SKSE W + + N C + +AD ++T+R TL Sbjct: 470 RLPCKHICAVFLSKSEWGWERLSPLCT-QNPLLSLDELCISSSPPSAD-CKNTERVTLYR 527 Query: 363 GRIPL*NSSVSKK 325 R+P + +S+K Sbjct: 528 ARVPRQKTLISEK 540 >SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1459 Score = 27.9 bits (59), Expect = 8.9 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = +1 Query: 625 RSPRQAGPPPKSLPSRRNSLNTSKLATR 708 RSP Q PPP+S R+ N+ TR Sbjct: 154 RSPSQTKPPPRSESKRQEQQNSKPTETR 181 >SB_41873| Best HMM Match : Homeobox (HMM E-Value=2.3e-29) Length = 651 Score = 27.9 bits (59), Expect = 8.9 Identities = 10/25 (40%), Positives = 15/25 (60%) Frame = -1 Query: 473 PHGTEPIPASWNRPPAS*PWSEQQI 399 P G++P+ +SWN P PW Q + Sbjct: 452 PRGSQPLQSSWNPP----PWPRQNV 472 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 24,636,102 Number of Sequences: 59808 Number of extensions: 529578 Number of successful extensions: 1678 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 1493 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1672 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1949964354 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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