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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30289
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49893| Best HMM Match : ATP-synt_ab (HMM E-Value=0)                295   3e-80
SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)             279   1e-75
SB_42081| Best HMM Match : ATP-synt_ab (HMM E-Value=8.3e-07)          175   3e-44
SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.)              73   2e-13
SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0)                 54   2e-07
SB_12803| Best HMM Match : Lig_chan (HMM E-Value=0)                    33   0.24 
SB_8607| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.31 
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.9  
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)                   29   3.9  
SB_21412| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_9194| Best HMM Match : SWIM (HMM E-Value=0.01)                      28   6.7  
SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_41873| Best HMM Match : Homeobox (HMM E-Value=2.3e-29)              28   8.9  

>SB_49893| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
          Length = 313

 Score =  295 bits (723), Expect = 3e-80
 Identities = 144/217 (66%), Positives = 175/217 (80%), Gaps = 11/217 (5%)
 Frame = +2

Query: 17  YSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 196
           Y+GC MGE+FRD G+ ALI+YDDLSKQAVAYRQ+SLLLRRPPGREAYPGDVFYLHSRLLE
Sbjct: 40  YAGCTMGEYFRDRGEDALIVYDDLSKQAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLE 99

Query: 197 RAAKMSDKM------GG-----GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETEL 343
           RA+++S++       G      GSLTALP+IETQAGDVSA++PTNVISITDGQIFLE+ +
Sbjct: 100 RASRVSEEYVEKFTNGAVTGKTGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLESAM 159

Query: 344 FYKGIRPAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDAATQQ 523
           F  GIRPA+N G+SVSRVG AAQTK +K+++G ++  LAQYRE+AAFAQF SDLD AT++
Sbjct: 160 FNSGIRPAVNAGISVSRVGGAAQTKIIKKLSGGIRTALAQYRELAAFAQFASDLDEATRK 219

Query: 524 LLNRGMRLTELLKQGQYVPMAIEEQVAIIYCGVRGHL 634
            L  G R+TEL+KQ QY PM+I +    +Y   RG L
Sbjct: 220 QLEHGQRVTELMKQKQYAPMSIADMSVSLYAAERGFL 256


>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score =  279 bits (685), Expect = 1e-75
 Identities = 135/140 (96%), Positives = 137/140 (97%)
 Frame = +2

Query: 17  YSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 196
           YSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE
Sbjct: 197 YSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 256

Query: 197 RAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINV 376
           RAAKM+D  GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINV
Sbjct: 257 RAAKMNDSNGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINV 316

Query: 377 GLSVSRVGSAAQTKAMKQVA 436
           GLSVSRVGSAAQTKAMKQ +
Sbjct: 317 GLSVSRVGSAAQTKAMKQTS 336


>SB_42081| Best HMM Match : ATP-synt_ab (HMM E-Value=8.3e-07)
          Length = 99

 Score =  175 bits (426), Expect = 3e-44
 Identities = 84/97 (86%), Positives = 91/97 (93%)
 Frame = +2

Query: 146 REAYPGDVFYLHSRLLERAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQI 325
           REAYPGDVFYLHSRLLERAAK+SD +G GSLTALP+IETQAGDVSAYIPTNVISITDGQI
Sbjct: 2   REAYPGDVFYLHSRLLERAAKLSDALGAGSLTALPIIETQAGDVSAYIPTNVISITDGQI 61

Query: 326 FLETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQVA 436
           FL++ELFY GIRPAINVGLSVSRVGSAAQ   MK++A
Sbjct: 62  FLDSELFYNGIRPAINVGLSVSRVGSAAQVAMMKKLA 98


>SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 41/122 (33%), Positives = 69/122 (56%)
 Frame = +2

Query: 59  KHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDKMGGGSL 238
           KH L+I  D+S  A A R++S      PGR  +PG ++   + + ERA ++  +   GS+
Sbjct: 209 KHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATVYERAGRVEGR--NGSI 266

Query: 239 TALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTK 418
           T +P++     D++  IP     IT+GQI+++ +L  + I P INV  S+SR+  +A  +
Sbjct: 267 TQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGE 326

Query: 419 AM 424
            M
Sbjct: 327 GM 328


>SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
          Length = 475

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 6/132 (4%)
 Frame = +2

Query: 17  YSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL-- 190
           Y+G  + E+FRD G H  ++ D  S+ A A R++S  L   P    YP    YL +RL  
Sbjct: 186 YTGITLSEYFRDMGHHVSMMADSTSRWAEALREISGRLAEMPADSGYPA---YLGARLAS 242

Query: 191 -LERAAKMS---DKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGI 358
             ERA ++S   +    GS+T +  +    GD S  + +  ++I      L+ +L  +  
Sbjct: 243 FYERAGRVSCLGNPQREGSVTIVGAVSPPGGDFSDPVTSATLNIVQVFWGLDKKLAQRKH 302

Query: 359 RPAINVGLSVSR 394
            P+IN  +S S+
Sbjct: 303 FPSINWLISYSK 314


>SB_12803| Best HMM Match : Lig_chan (HMM E-Value=0)
          Length = 1001

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 21/59 (35%), Positives = 26/59 (44%)
 Frame = -2

Query: 202 GTLKQTGVKIEHVTRISLTAGGTTQQ*RHLTVGYGLFGQIVVDNKGVFAIITEKFTHGT 26
           G    TG   + +T  S T G T Q    L   YGLFG+   DN     I+T    HG+
Sbjct: 221 GRAHYTGFDFQELTNWSSTKGLTDQGKHQLLYKYGLFGRSYYDNSTRLRIVT--IEHGS 277


>SB_8607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 564

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 595 TGRHHLLRCPRSPRQAGPPPKSLP-SRRNSLNTSKLAT 705
           TGRHH+    RSPR   PP +  P  +R    T KL T
Sbjct: 427 TGRHHVASDDRSPRNDSPPTRQPPEQQRVDSKTRKLFT 464


>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 783

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 44  FRDNGKHALIIYDDLSKQAVAYRQM 118
           +R  G HA I+YD L   +VA R+M
Sbjct: 349 YRKGGDHAYILYDSLDAASVAAREM 373


>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
          Length = 5087

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +2

Query: 374  VGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDAAT 517
            +G+S  R     + +  K+V  S + E+A+  EV AFA   S+ D AT
Sbjct: 1770 LGISEEREQETEELEEHKEVVESEETEMAEEEEVPAFADIPSE-DTAT 1816


>SB_21412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1015

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -1

Query: 506  PSQNRTGQKLRPHGTEPIPASWNRPPAS 423
            P+Q R+GQ  R  G  P+PAS +RP  S
Sbjct: 953  PAQ-RSGQGKRDQGNAPVPASRSRPVPS 979


>SB_9194| Best HMM Match : SWIM (HMM E-Value=0.01)
          Length = 701

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 21/73 (28%), Positives = 33/73 (45%)
 Frame = -3

Query: 543 RIPLLSSCCVAASKSEPNWAKAATSRY*ANSSFMEPATCFIALV*AADPTRDTDRPTLMA 364
           R+P    C V  SKSE  W + +      N        C  +   +AD  ++T+R TL  
Sbjct: 470 RLPCKHICAVFLSKSEWGWERLSPLCT-QNPLLSLDELCISSSPPSAD-CKNTERVTLYR 527

Query: 363 GRIPL*NSSVSKK 325
            R+P   + +S+K
Sbjct: 528 ARVPRQKTLISEK 540


>SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1459

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 625 RSPRQAGPPPKSLPSRRNSLNTSKLATR 708
           RSP Q  PPP+S   R+   N+    TR
Sbjct: 154 RSPSQTKPPPRSESKRQEQQNSKPTETR 181


>SB_41873| Best HMM Match : Homeobox (HMM E-Value=2.3e-29)
          Length = 651

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 473 PHGTEPIPASWNRPPAS*PWSEQQI 399
           P G++P+ +SWN P    PW  Q +
Sbjct: 452 PRGSQPLQSSWNPP----PWPRQNV 472


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,636,102
Number of Sequences: 59808
Number of extensions: 529578
Number of successful extensions: 1678
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1672
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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