Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30289
(728 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical ... 406 e-114
AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical ... 406 e-114
AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical ... 406 e-114
AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily a... 75 7e-14
U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpa... 72 4e-13
Z82053-6|CAB04832.1| 106|Caenorhabditis elegans Hypothetical pr... 54 8e-08
AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical ... 46 4e-05
U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase su... 39 0.003
U28928-1|AAA68334.3| 589|Caenorhabditis elegans Anchor cell fus... 29 3.4
EF205023-1|ABP04049.1| 589|Caenorhabditis elegans anchor cell f... 29 3.4
AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trn... 29 4.5
AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trn... 29 4.5
>AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical
protein H28O16.1d protein.
Length = 511
Score = 406 bits (1000), Expect = e-114
Identities = 195/211 (92%), Positives = 206/211 (97%)
Frame = +2
Query: 17 YSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 196
YSGCAMGE FRDNGKHALII+DDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE
Sbjct: 249 YSGCAMGEHFRDNGKHALIIFDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 308
Query: 197 RAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINV 376
RAAKM++ +GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKG+RPAINV
Sbjct: 309 RAAKMNNSLGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGVRPAINV 368
Query: 377 GLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDAATQQLLNRGMRLTEL 556
GLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDA+TQQLLNRG+RLTEL
Sbjct: 369 GLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDASTQQLLNRGVRLTEL 428
Query: 557 LKQGQYVPMAIEEQVAIIYCGVRGHLDKLDP 649
LKQGQYVPM IEEQV +IY GV+G+LDK+DP
Sbjct: 429 LKQGQYVPMGIEEQVGVIYAGVKGYLDKVDP 459
Score = 33.1 bits (72), Expect = 0.21
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +3
Query: 657 ITAFEKEFTQHIKTSHQGLLSTI 725
IT FEKEF H+++S Q LL TI
Sbjct: 462 ITKFEKEFLAHLRSSQQALLKTI 484
>AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical
protein H28O16.1c protein.
Length = 503
Score = 406 bits (1000), Expect = e-114
Identities = 195/211 (92%), Positives = 206/211 (97%)
Frame = +2
Query: 17 YSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 196
YSGCAMGE FRDNGKHALII+DDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE
Sbjct: 241 YSGCAMGEHFRDNGKHALIIFDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 300
Query: 197 RAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINV 376
RAAKM++ +GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKG+RPAINV
Sbjct: 301 RAAKMNNSLGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGVRPAINV 360
Query: 377 GLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDAATQQLLNRGMRLTEL 556
GLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDA+TQQLLNRG+RLTEL
Sbjct: 361 GLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDASTQQLLNRGVRLTEL 420
Query: 557 LKQGQYVPMAIEEQVAIIYCGVRGHLDKLDP 649
LKQGQYVPM IEEQV +IY GV+G+LDK+DP
Sbjct: 421 LKQGQYVPMGIEEQVGVIYAGVKGYLDKVDP 451
Score = 33.1 bits (72), Expect = 0.21
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +3
Query: 657 ITAFEKEFTQHIKTSHQGLLSTI 725
IT FEKEF H+++S Q LL TI
Sbjct: 454 ITKFEKEFLAHLRSSQQALLKTI 476
>AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical
protein H28O16.1a protein.
Length = 538
Score = 406 bits (1000), Expect = e-114
Identities = 195/211 (92%), Positives = 206/211 (97%)
Frame = +2
Query: 17 YSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 196
YSGCAMGE FRDNGKHALII+DDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE
Sbjct: 276 YSGCAMGEHFRDNGKHALIIFDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 335
Query: 197 RAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINV 376
RAAKM++ +GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKG+RPAINV
Sbjct: 336 RAAKMNNSLGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGVRPAINV 395
Query: 377 GLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDAATQQLLNRGMRLTEL 556
GLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDA+TQQLLNRG+RLTEL
Sbjct: 396 GLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDASTQQLLNRGVRLTEL 455
Query: 557 LKQGQYVPMAIEEQVAIIYCGVRGHLDKLDP 649
LKQGQYVPM IEEQV +IY GV+G+LDK+DP
Sbjct: 456 LKQGQYVPMGIEEQVGVIYAGVKGYLDKVDP 486
Score = 33.1 bits (72), Expect = 0.21
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +3
Query: 657 ITAFEKEFTQHIKTSHQGLLSTI 725
IT FEKEF H+++S Q LL TI
Sbjct: 489 ITKFEKEFLAHLRSSQQALLKTI 511
>AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily
assigned gene nameprotein 300 protein.
Length = 501
Score = 74.5 bits (175), Expect = 7e-14
Identities = 43/130 (33%), Positives = 74/130 (56%), Gaps = 1/130 (0%)
Frame = +2
Query: 38 EFFRDN-GKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMS 214
EFF + GKH L++ D+S A A R++S PGR +PG ++ + + ERA ++
Sbjct: 275 EFFAYHCGKHVLVVLTDMSSYAEALREISAAREEVPGRRGFPGYMYTDLATIYERAGRVK 334
Query: 215 DKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSR 394
+ GS+T +P++ D++ IP IT+GQI+++ +L + I P I+V S+SR
Sbjct: 335 GR--EGSITQIPILTMPNNDITHPIPDLTGYITEGQIYIDKQLHKRLIYPPIDVLPSLSR 392
Query: 395 VGSAAQTKAM 424
+ +A + M
Sbjct: 393 LMKSAVGEGM 402
>U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpase
protein 12 protein.
Length = 491
Score = 72.1 bits (169), Expect = 4e-13
Identities = 40/122 (32%), Positives = 69/122 (56%)
Frame = +2
Query: 59 KHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSDKMGGGSL 238
KH L++ D+S A A R++S PGR +PG ++ + + ERA ++ + GS+
Sbjct: 271 KHVLVVLTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGR--DGSI 328
Query: 239 TALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTK 418
T +P++ D++ IP IT+GQI+++ +L + I P INV S+SR+ +A +
Sbjct: 329 TQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRLIYPPINVLPSLSRLMKSAIGE 388
Query: 419 AM 424
M
Sbjct: 389 GM 390
>Z82053-6|CAB04832.1| 106|Caenorhabditis elegans Hypothetical
protein T26E3.7 protein.
Length = 106
Score = 54.4 bits (125), Expect = 8e-08
Identities = 23/28 (82%), Positives = 26/28 (92%)
Frame = +2
Query: 17 YSGCAMGEFFRDNGKHALIIYDDLSKQA 100
YSGCA+GE F DNGKHALII+DDLSK+A
Sbjct: 23 YSGCAIGEHFLDNGKHALIIFDDLSKKA 50
>AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical
protein Y49A3A.2 protein.
Length = 606
Score = 45.6 bits (103), Expect = 4e-05
Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Frame = +2
Query: 17 YSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 196
Y+G + E+FRD G + ++ D S+ A A R++S L P YP + + E
Sbjct: 317 YTGITLAEYFRDMGLNVAMMADSTSRWAEALREISGRLGEMPADSGYPAYLAARLASFYE 376
Query: 197 RAAK---MSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPA 367
RA + + GS+T + + GD + + + + I L+ +L + P+
Sbjct: 377 RAGRVKCLGSPEREGSVTIVGAVSPPGGDFADPVTSATLGIVQVFWGLDKKLAQRKHFPS 436
Query: 368 INVGLSVS 391
IN +S S
Sbjct: 437 INWLISYS 444
>U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase
subunit protein 2 protein.
Length = 538
Score = 39.1 bits (87), Expect = 0.003
Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 1/127 (0%)
Frame = +2
Query: 20 SGCAMGEFFRDN-GKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 196
+G + E+FRD G+ L+ D++ + A ++S LL R P Y + + E
Sbjct: 294 TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGSMQE 353
Query: 197 RAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINV 376
R GS+T++ I A D++ P + D L + I PA++
Sbjct: 354 RITTTKK----GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRGIAELAIYPAVDP 409
Query: 377 GLSVSRV 397
S SR+
Sbjct: 410 LDSTSRI 416
>U28928-1|AAA68334.3| 589|Caenorhabditis elegans Anchor cell fusion
failure protein1 protein.
Length = 589
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 486 PSSVLTWMPLHSSCSTEECVLLSSSSKDNMCPWLL 590
P +W HS CS EC L S D + PW++
Sbjct: 489 PRQEQSWSKGHSPCSQAECNSLKSGVSD-LFPWIM 522
>EF205023-1|ABP04049.1| 589|Caenorhabditis elegans anchor cell
fusion failure-1 protein.
Length = 589
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 486 PSSVLTWMPLHSSCSTEECVLLSSSSKDNMCPWLL 590
P +W HS CS EC L S D + PW++
Sbjct: 489 PRQEQSWSKGHSPCSQAECNSLKSGVSD-LFPWIM 522
>AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform a protein.
Length = 909
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -2
Query: 580 GHILSLLEELSKTHSSVEQLLCSGIQVRTELGKSCDLTVL 461
G L L+EE K S V + LC + R+ + K +L L
Sbjct: 649 GKELKLMEEFGKLKSEVHEALCDSVDTRSVIEKFRELISL 688
>AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform b protein.
Length = 908
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -2
Query: 580 GHILSLLEELSKTHSSVEQLLCSGIQVRTELGKSCDLTVL 461
G L L+EE K S V + LC + R+ + K +L L
Sbjct: 648 GKELKLMEEFGKLKSEVHEALCDSVDTRSVIEKFRELISL 687
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,646,952
Number of Sequences: 27780
Number of extensions: 379630
Number of successful extensions: 1182
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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