Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30287
(722 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g05330.1 68418.m00574 hypothetical protein 33 0.25
At3g59780.1 68416.m06671 expressed protein 29 2.4
At2g36200.1 68415.m04444 kinesin motor protein-related 29 2.4
At2g29830.1 68415.m03623 kelch repeat-containing F-box family pr... 29 2.4
At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related conta... 29 3.1
At3g23740.1 68416.m02985 expressed protein 29 3.1
At5g61420.2 68418.m07707 myb family transcription factor (MYB28)... 29 4.1
At5g61420.1 68418.m07706 myb family transcription factor (MYB28)... 29 4.1
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 29 4.1
At5g15580.1 68418.m01824 expressed protein unknown protein F14P3... 29 4.1
At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containi... 29 4.1
At1g22730.1 68414.m02840 MA3 domain-containing protein contains ... 29 4.1
At5g65820.1 68418.m08282 pentatricopeptide (PPR) repeat-containi... 28 5.5
At3g51580.1 68416.m05650 expressed protein 28 5.5
At3g14770.1 68416.m01867 nodulin MtN3 family protein similar to ... 28 5.5
At2g45000.1 68415.m05603 expressed protein contains Pfam profile... 28 7.2
At5g26030.1 68418.m03097 ferrochelatase I identical to Swiss-Pro... 27 9.5
At5g15130.1 68418.m01773 WRKY family transcription factor contai... 27 9.5
At3g19370.1 68416.m02457 expressed protein 27 9.5
At3g08820.1 68416.m01024 pentatricopeptide (PPR) repeat-containi... 27 9.5
At2g42320.1 68415.m05238 nucleolar protein gar2-related contains... 27 9.5
>At5g05330.1 68418.m00574 hypothetical protein
Length = 221
Score = 32.7 bits (71), Expect = 0.25
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +2
Query: 137 YLKEIQEEYHGPDGDCSEI--ETKKNVNSETKNPVEKSKNGIFSESSRDLTVSGSSIFKL 310
+L+E +E Y+G D S I KN+++E + P + S SR L +I+K
Sbjct: 115 FLEEFRENYNGDLVDASRICFNVWKNMSAEDQKPFNARAMEVDSAHSRKLNEEAKTIYKA 174
Query: 311 D 313
D
Sbjct: 175 D 175
>At3g59780.1 68416.m06671 expressed protein
Length = 610
Score = 29.5 bits (63), Expect = 2.4
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Frame = -3
Query: 408 VAVFIPKENPFG-LSPSILQELLNGVVENGLDGSNLNID-DPDTVRSLLDSEKIPFFDFS 235
V +P +P LS L + + ++++ G+N + PD+ SL D+ K F DFS
Sbjct: 38 VEAVVPDVSPIECLSAETLTDKTSSLIDSVESGTNATVKISPDSSVSLPDA-KASFDDFS 96
Query: 234 TGFFVSELTFFFVSISEQSPSGP*YSSCISFKYAS*SLNIG 112
+G S F S+ + S +SS + ++S SLN G
Sbjct: 97 SGLKQS----FSSSLPDAKASVDDFSSGVKESFSS-SLNQG 132
>At2g36200.1 68415.m04444 kinesin motor protein-related
Length = 1056
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/32 (31%), Positives = 22/32 (68%)
Frame = +2
Query: 125 DYEAYLKEIQEEYHGPDGDCSEIETKKNVNSE 220
+Y+ L+E+Q++Y G +CS++ TK ++ +
Sbjct: 428 NYQKQLEELQDKYVGQVRECSDLTTKLDITEK 459
>At2g29830.1 68415.m03623 kelch repeat-containing F-box family
protein contains Pfam PF00646: F-box domain; contains
Pfam PF01344 : Kelch motif; similar to SKP1 interacting
partner 6 (GI:10716957) [Arabidopsis thaliana]
Length = 383
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/29 (41%), Positives = 22/29 (75%)
Frame = -3
Query: 543 GEPSEDGLDFNPKEKVFDVCILLEFVDEV 457
G+P+ED + NP+E+V ++ ILL+ +E+
Sbjct: 9 GDPNEDNQNENPQEEVENLPILLQLPEEL 37
>At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 738
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 134 AYLKEIQEEYHGPDGDCSEIETKKNVNSETKNPVEKSKNGIFSESSRDLTV 286
++ KE + + G C+ +E VNS + V+KSK+ F R TV
Sbjct: 81 SHSKESEFQKTGDASACANVEKANKVNSLATDDVDKSKSKPFEVYKRRTTV 131
>At3g23740.1 68416.m02985 expressed protein
Length = 542
Score = 29.1 bits (62), Expect = 3.1
Identities = 21/76 (27%), Positives = 39/76 (51%)
Frame = +2
Query: 119 FRDYEAYLKEIQEEYHGPDGDCSEIETKKNVNSETKNPVEKSKNGIFSESSRDLTVSGSS 298
+R YLK+IQE+ P + E+ + +NSE+ N E ++ + S +R+ SG+S
Sbjct: 228 YRRMLPYLKDIQEDNPYPQKNTEEVISSPMLNSESDN--EGTQEVVTSNVTRE---SGTS 282
Query: 299 IFKLDPSKPFSTTPLS 346
+ + P P++
Sbjct: 283 SDENEEPLPCERVPVN 298
>At5g61420.2 68418.m07707 myb family transcription factor (MYB28)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 366
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +2
Query: 200 KKNVNSETKNPVEKSKNGIFSESSRDLTVSGSSI-FKLDPSKPFSTTPLSSSCNML 364
++ ++ T P+ S N E+ S S + S PF + P SSCNM+
Sbjct: 118 EQGIDPVTHKPLASSSNPTVDENLNSPNASSSDKQYSRSSSMPFLSRPPPSSCNMV 173
>At5g61420.1 68418.m07706 myb family transcription factor (MYB28)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 287
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +2
Query: 200 KKNVNSETKNPVEKSKNGIFSESSRDLTVSGSSI-FKLDPSKPFSTTPLSSSCNML 364
++ ++ T P+ S N E+ S S + S PF + P SSCNM+
Sbjct: 39 EQGIDPVTHKPLASSSNPTVDENLNSPNASSSDKQYSRSSSMPFLSRPPPSSCNMV 94
>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to chromatin
remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
GI:6478518; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00628: PHD-finger, PF00385: 'chromo'
(CHRromatin Organization MOdifier)
Length = 2228
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +2
Query: 524 PSSDGSPLKFGAPSLTSTNTNNTEPANQEDEDVPPKVEFTPIA 652
PS G P L N N+TEP + E +PP E + IA
Sbjct: 2076 PSLAGETSGSSQPKLPPHNLNSTEPLSSEAIIIPPPEEDSVIA 2118
>At5g15580.1 68418.m01824 expressed protein unknown protein F14P3.18
- Arabidopsis thaliana, EMBL:AC009755
Length = 927
Score = 28.7 bits (61), Expect = 4.1
Identities = 22/79 (27%), Positives = 37/79 (46%)
Frame = +2
Query: 194 ETKKNVNSETKNPVEKSKNGIFSESSRDLTVSGSSIFKLDPSKPFSTTPLSSSCNMLGDK 373
+ K+ S+ K ++ + G+ SESS L+ S S S FS+ +S++ + ++
Sbjct: 65 DKKETEKSKKKKTAKEKQRGVSSESSSRLSFSSSPC-----SSSFSSADISTTASQF-EQ 118
Query: 374 PKGFSFGINTATSTINSIP 430
P G S G N N P
Sbjct: 119 P-GLSNGENPVREPTNGSP 136
>At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 551
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 173 DGDCSEIETKKNVNSETKNPVEKSKNGIFSESSRDL-TVSGSSIFKLDPSKPFST 334
DG S + K + NS+ VEK K SES R + + + I +L +K FST
Sbjct: 51 DGGQSSNDAKDSKNSKLTQKVEKFKRSCESESFRQVHGLYSAFIRRLREAKKFST 105
>At1g22730.1 68414.m02840 MA3 domain-containing protein contains
Pfam profile PF02847: MA3 domain; low similarity to
programmed cell death 4 protein [Gallus gallus]
GI:12958564
Length = 693
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/67 (29%), Positives = 32/67 (47%)
Frame = -3
Query: 522 LDFNPKEKVFDVCILLEFVDEVPKENPVLIAGMLFIVLVAVFIPKENPFGLSPSILQELL 343
L F PK+ +L+E D+ +NPV++ + + AV L+P L+E+L
Sbjct: 455 LGFPPKDVRSAFSMLIESADDTALDNPVVVEDLAMFLARAVVDEV-----LAPRDLEEVL 509
Query: 342 NGVVENG 322
N E G
Sbjct: 510 NQTPEAG 516
>At5g65820.1 68418.m08282 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 637
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -3
Query: 468 VDEVPKENPVLIAGMLFIVLVAVF 397
++E+ KENP LI LF+VLV F
Sbjct: 170 IEEMRKENPQLIEPELFVVLVQRF 193
>At3g51580.1 68416.m05650 expressed protein
Length = 390
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 512 LKSSPSSDG-SPLKFGAPSLTSTNTNNTEPANQEDEDVPPKVEFTPIAEEN 661
+ P DG S + P+L ++N+ NT P +E + + P P+ E+N
Sbjct: 49 INPQPIGDGKSNVTSSEPTLPTSNSTNTNP--KEPDSMSPPPPLIPVNEKN 97
>At3g14770.1 68416.m01867 nodulin MtN3 family protein similar to
MtN3 GI:1619602 (root nodule development) from [Medicago
truncatula]
Length = 236
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -3
Query: 495 FDVCILLEFVDEVPKENPVLIAGMLFIVLVAV 400
F +C ++ F+ K+N + + G+LF+V V
Sbjct: 88 FQLCYIILFIMHTDKKNKMKMLGLLFVVFAVV 119
>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
PF05064 Nsp1-like C-terminal region
Length = 739
Score = 27.9 bits (59), Expect = 7.2
Identities = 28/113 (24%), Positives = 45/113 (39%)
Frame = +2
Query: 266 SSRDLTVSGSSIFKLDPSKPFSTTPLSSSCNMLGDKPKGFSFGINTATSTINSIPAIXXX 445
S+ L + SS PS +++ SS ++ G SF + A+S S P+I
Sbjct: 216 STSPLFGAPSSATGATPSFSVASSAPGSSSSIFGATGSSPSFSV--ASSASGSSPSIFGA 273
Query: 446 XXXXXXXXXXXXXXXXXXFSFGLKSSPSSDGSPLKFGAPSLTSTNTNNTEPAN 604
F SS ++ SP FG + S++T+NT A+
Sbjct: 274 TGSSPFFGSSSSAGSTPSL-FASSSSGATTSSPSPFGVSTFNSSSTSNTSNAS 325
>At5g26030.1 68418.m03097 ferrochelatase I identical to
Swiss-Prot:P42043 ferrochelatase I,
chloroplast/mitochondrial precursor (EC 4.99.1.1)
(Protoheme ferro-lyase) (Heme synthetase) [Arabidopsis
thaliana]
Length = 466
Score = 27.5 bits (58), Expect = 9.5
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = -3
Query: 375 GLSPSILQELLNGVVENGLDGSNLNIDDPDTVRSLLDSEKIPFFDFSTGFFVSELTFFFV 196
GL+PS + +L + V+E+ L + + +P+ V DSE F + F + F +
Sbjct: 396 GLTPSFITDLADAVIES-LPSAEA-MSNPNAVVDSEDSESSDAFSYIVKMFFGSILAFVL 453
Query: 195 SIS 187
+S
Sbjct: 454 LLS 456
>At5g15130.1 68418.m01773 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain; TMV
response-related gene product, Nicotiana tabacum,
EMBL:AB024510
Length = 548
Score = 27.5 bits (58), Expect = 9.5
Identities = 25/78 (32%), Positives = 35/78 (44%)
Frame = +2
Query: 146 EIQEEYHGPDGDCSEIETKKNVNSETKNPVEKSKNGIFSESSRDLTVSGSSIFKLDPSKP 325
+I E G DGD E+E+ K SE K EK K G+ D F + +P
Sbjct: 22 QIHEANKG-DGDHQELESAKAEMSEVKEENEKLK-GMLERIESDYKSLKLRFFDIIQQEP 79
Query: 326 FSTTPLSSSCNMLGDKPK 379
+T + + NM+ D PK
Sbjct: 80 SNTA--TKNQNMV-DHPK 94
>At3g19370.1 68416.m02457 expressed protein
Length = 704
Score = 27.5 bits (58), Expect = 9.5
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = +2
Query: 173 DGDCSEIETKKNVNSETKNPVEKSKNG-IFSESSRDLTVSGSSIFKLDPS-KPFSTTPLS 346
+G C E++ + + ETK P +++KNG + +S L+ +I L + STT S
Sbjct: 564 EGTCIELQLQLE-SVETKKPTQRNKNGWDIATASVKLSECQETITSLRKQLRALSTTETS 622
Query: 347 SSCNML 364
S+ L
Sbjct: 623 STIKFL 628
>At3g08820.1 68416.m01024 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 685
Score = 27.5 bits (58), Expect = 9.5
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = -1
Query: 263 QKKFHFLIF---QQDFLFLN*HSFLSQFQSNHHLVHDTLPVFLLNMLHSL 123
Q K+ +L+F Q +FL +S ++ F +NH L H+TL +FL H L
Sbjct: 60 QTKYSYLLFSHTQFPNIFLY-NSLINGFVNNH-LFHETLDLFLSIRKHGL 107
>At2g42320.1 68415.m05238 nucleolar protein gar2-related contains
weak similarity to Swiss-Prot:P41891 protein gar2
[Schizosaccharomyces pombe]
Length = 669
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 203 KNVNSETKNPVEKSKN-GIFSESSRDLTVSGSSIFKLDPSKPFST 334
+ NS+ K EK K+ ESS TV+ S + DPS+ + T
Sbjct: 26 QKTNSQKKTEQEKHKDLDTKEESSNISTVASDSTIQSDPSESYET 70
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,704,401
Number of Sequences: 28952
Number of extensions: 271648
Number of successful extensions: 1142
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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