Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30285
         (476 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              31   0.49 
SB_9212| Best HMM Match : RVT_1 (HMM E-Value=4.5e-36)                  27   7.9  

>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 300 CFVSIYYYCYFYIANLISYICY 235
           C+   YYYCY+Y      Y CY
Sbjct: 480 CYCYCYYYCYYYCYCYCYYCCY 501



 Score = 29.5 bits (63), Expect = 1.5
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -3

Query: 300 CFVSIYYYCYFYIANLISYICY 235
           C+   YYYCY Y      Y CY
Sbjct: 472 CYCYCYYYCYCYCYYYCYYYCY 493


>SB_9212| Best HMM Match : RVT_1 (HMM E-Value=4.5e-36)
          Length = 449

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 414 SINVSYPRYMLIGTKKTMGTEHHFITIKTCSK 319
           S+NV+   YM++G+ + +    H I IK   K
Sbjct: 418 SLNVTKTEYMILGSAQRLSNLEHLINIKINEK 449


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,072,582
Number of Sequences: 59808
Number of extensions: 159419
Number of successful extensions: 272
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)