Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30285
         (476 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   1.7  
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    21   5.1  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   5.1  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   9.0  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 231 LHNIYN**D*LYKNNNSNILRQNRACYIKIYY 326
           +HN  N  +  Y NN +N    N   Y K+YY
Sbjct: 323 IHNNNNYNNNNYNNNYNNYNNNNYNNYKKLYY 354


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 154 GLYKFCQTYITSKYN 198
           G+ K+C+TY  S Y+
Sbjct: 62  GMKKYCETYKNSIYD 76


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 298 TGLAILKFTTCFYCYEMVLCAHSFFCAY 381
           TG  ILK T CF    M+L   +FF ++
Sbjct: 218 TGTIILKKTVCFVIPIMLLFL-AFFVSF 244


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 264 YKNNNSNILRQNRACYIKIYYM 329
           Y N N+N    N+  Y  I Y+
Sbjct: 94  YNNYNNNYNNYNKKLYYNINYI 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,736
Number of Sequences: 438
Number of extensions: 2381
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)